Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC21.05■□□□□ 0.96
USP54Q70EL1 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC21.05■□□□□ 0.96
USP54Q70EL1 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP54Q70EL1 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC21.05■□□□□ 0.96
USP54Q70EL1 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP54Q70EL1 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP54Q70EL1 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP54Q70EL1 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
USP54Q70EL1 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
USP54Q70EL1 AP003171.2-201ENST00000528208 925 ntBASIC21.05■□□□□ 0.96
USP54Q70EL1 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC21.05■□□□□ 0.96
USP54Q70EL1 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
USP54Q70EL1 KLK3-211ENST00000597483 810 ntTSL 2 BASIC21.05■□□□□ 0.96
USP54Q70EL1 AC010328.2-201ENST00000597698 1111 ntBASIC21.05■□□□□ 0.96
USP54Q70EL1 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC21.05■□□□□ 0.96
USP54Q70EL1 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
USP54Q70EL1 AC138951.2-201ENST00000623455 1161 ntBASIC21.05■□□□□ 0.96
USP54Q70EL1 ABBA01031663.1-201ENST00000635630 790 ntBASIC21.05■□□□□ 0.96
USP54Q70EL1 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP54Q70EL1 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
USP54Q70EL1 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP54Q70EL1 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC21.05■□□□□ 0.96
USP54Q70EL1 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
USP54Q70EL1 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP54Q70EL1 AC011676.5-201ENST00000624864 2660 ntBASIC21.04■□□□□ 0.96
USP54Q70EL1 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC21.04■□□□□ 0.96
USP54Q70EL1 LOX-206ENST00000639739 1626 ntTSL 5 BASIC21.04■□□□□ 0.96
USP54Q70EL1 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP54Q70EL1 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
USP54Q70EL1 ACKR1-201ENST00000368121 1240 ntBASIC21.04■□□□□ 0.96
USP54Q70EL1 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC21.04■□□□□ 0.96
USP54Q70EL1 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC21.04■□□□□ 0.96
USP54Q70EL1 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
USP54Q70EL1 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
USP54Q70EL1 AL139099.5-201ENST00000635274 300 ntBASIC21.04■□□□□ 0.96
USP54Q70EL1 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
USP54Q70EL1 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
USP54Q70EL1 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP54Q70EL1 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC21.04■□□□□ 0.96
USP54Q70EL1 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP54Q70EL1 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
USP54Q70EL1 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
USP54Q70EL1 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
USP54Q70EL1 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
USP54Q70EL1 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
USP54Q70EL1 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP54Q70EL1 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC21.03■□□□□ 0.96
USP54Q70EL1 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP54Q70EL1 SUN1-204ENST00000403868 978 ntTSL 2 BASIC21.03■□□□□ 0.96
USP54Q70EL1 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP54Q70EL1 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC21.03■□□□□ 0.96
USP54Q70EL1 HARS-202ENST00000415192 1401 ntTSL 2 BASIC21.03■□□□□ 0.96
USP54Q70EL1 FOS-202ENST00000535987 1402 ntTSL 2 BASIC21.03■□□□□ 0.96
USP54Q70EL1 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC21.03■□□□□ 0.96
USP54Q70EL1 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
USP54Q70EL1 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP54Q70EL1 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
USP54Q70EL1 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
USP54Q70EL1 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
USP54Q70EL1 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP54Q70EL1 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
USP54Q70EL1 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
USP54Q70EL1 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC21.02■□□□□ 0.96
USP54Q70EL1 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
USP54Q70EL1 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC21.02■□□□□ 0.96
USP54Q70EL1 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC21.02■□□□□ 0.96
USP54Q70EL1 AHRR-211ENST00000515206 462 ntTSL 5 BASIC21.02■□□□□ 0.96
USP54Q70EL1 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
USP54Q70EL1 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
USP54Q70EL1 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC21.02■□□□□ 0.96
USP54Q70EL1 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
USP54Q70EL1 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
USP54Q70EL1 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC21.02■□□□□ 0.96
USP54Q70EL1 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
USP54Q70EL1 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
USP54Q70EL1 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC21.02■□□□□ 0.96
USP54Q70EL1 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC21.02■□□□□ 0.96
USP54Q70EL1 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC21.02■□□□□ 0.96
USP54Q70EL1 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC21.02■□□□□ 0.96
USP54Q70EL1 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
USP54Q70EL1 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC21.02■□□□□ 0.96
USP54Q70EL1 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
USP54Q70EL1 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
USP54Q70EL1 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
USP54Q70EL1 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
USP54Q70EL1 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
USP54Q70EL1 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC21.02■□□□□ 0.95
USP54Q70EL1 BRWD1P1-201ENST00000401091 371 ntBASIC21.02■□□□□ 0.95
USP54Q70EL1 MTX1P1-201ENST00000440904 838 ntBASIC21.02■□□□□ 0.95
USP54Q70EL1 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC21.02■□□□□ 0.95
USP54Q70EL1 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC21.02■□□□□ 0.95
USP54Q70EL1 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.95
USP54Q70EL1 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.95
USP54Q70EL1 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC21.02■□□□□ 0.95
USP54Q70EL1 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC21.02■□□□□ 0.95
USP54Q70EL1 PRKN-211ENST00000615065 261 ntTSL 5 BASIC21.02■□□□□ 0.95
USP54Q70EL1 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
USP54Q70EL1 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
USP54Q70EL1 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
USP54Q70EL1 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms