Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TPM4P67936 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC18.21■□□□□ 0.51
TPM4P67936 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
TPM4P67936 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TPM4P67936 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
TPM4P67936 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TPM4P67936 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
TPM4P67936 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
TPM4P67936 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.5
TPM4P67936 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
TPM4P67936 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC18.21■□□□□ 0.5
TPM4P67936 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC18.2■□□□□ 0.5
TPM4P67936 TMBIM7P-203ENST00000641617 1718 ntBASIC18.2■□□□□ 0.5
TPM4P67936 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TPM4P67936 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TPM4P67936 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
TPM4P67936 KCP-203ENST00000610776 5108 ntTSL 5 BASIC18.2■□□□□ 0.5
TPM4P67936 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC18.2■□□□□ 0.5
TPM4P67936 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TPM4P67936 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC18.2■□□□□ 0.5
TPM4P67936 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TPM4P67936 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TPM4P67936 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC18.2■□□□□ 0.5
TPM4P67936 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
TPM4P67936 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC18.2■□□□□ 0.5
TPM4P67936 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TPM4P67936 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
TPM4P67936 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC18.2■□□□□ 0.5
TPM4P67936 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC18.2■□□□□ 0.5
TPM4P67936 AL160237.2-201ENST00000556165 472 ntBASIC18.2■□□□□ 0.5
TPM4P67936 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
TPM4P67936 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC18.2■□□□□ 0.5
TPM4P67936 MTDHP4-201ENST00000600287 670 ntBASIC18.2■□□□□ 0.5
TPM4P67936 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC18.2■□□□□ 0.5
TPM4P67936 AC067750.1-201ENST00000608826 6545 ntBASIC18.2■□□□□ 0.5
TPM4P67936 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC18.2■□□□□ 0.5
TPM4P67936 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TPM4P67936 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC18.2■□□□□ 0.5
TPM4P67936 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
TPM4P67936 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TPM4P67936 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
TPM4P67936 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC18.2■□□□□ 0.5
TPM4P67936 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TPM4P67936 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TPM4P67936 SSR4P1-203ENST00000599569 2260 ntBASIC18.2■□□□□ 0.5
TPM4P67936 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TPM4P67936 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
TPM4P67936 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC18.2■□□□□ 0.5
TPM4P67936 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
TPM4P67936 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TPM4P67936 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TPM4P67936 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
TPM4P67936 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC18.19■□□□□ 0.5
TPM4P67936 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
TPM4P67936 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC18.19■□□□□ 0.5
TPM4P67936 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TPM4P67936 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC18.19■□□□□ 0.5
TPM4P67936 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TPM4P67936 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC18.19■□□□□ 0.5
TPM4P67936 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
TPM4P67936 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TPM4P67936 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
TPM4P67936 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TPM4P67936 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TPM4P67936 EMD-201ENST00000369835 966 ntTSL 3 BASIC18.19■□□□□ 0.5
TPM4P67936 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC18.19■□□□□ 0.5
TPM4P67936 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TPM4P67936 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC18.19■□□□□ 0.5
TPM4P67936 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
TPM4P67936 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC18.19■□□□□ 0.5
TPM4P67936 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TPM4P67936 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC18.19■□□□□ 0.5
TPM4P67936 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TPM4P67936 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TPM4P67936 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC18.19■□□□□ 0.5
TPM4P67936 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC18.19■□□□□ 0.5
TPM4P67936 AC087388.1-201ENST00000571370 1112 ntBASIC18.19■□□□□ 0.5
TPM4P67936 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC18.19■□□□□ 0.5
TPM4P67936 AC020658.6-201ENST00000623564 1870 ntBASIC18.19■□□□□ 0.5
TPM4P67936 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC18.19■□□□□ 0.5
TPM4P67936 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC18.19■□□□□ 0.5
TPM4P67936 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TPM4P67936 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC18.19■□□□□ 0.5
TPM4P67936 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC18.19■□□□□ 0.5
TPM4P67936 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TPM4P67936 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
TPM4P67936 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
TPM4P67936 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TPM4P67936 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
TPM4P67936 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC18.18■□□□□ 0.5
TPM4P67936 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TPM4P67936 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TPM4P67936 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
TPM4P67936 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TPM4P67936 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TPM4P67936 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC18.18■□□□□ 0.5
TPM4P67936 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
TPM4P67936 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TPM4P67936 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
TPM4P67936 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms