Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC18.63■□□□□ 0.57
CTCFP49711 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC18.63■□□□□ 0.57
CTCFP49711 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
CTCFP49711 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC18.63■□□□□ 0.57
CTCFP49711 RN7SL555P-201ENST00000584742 339 ntBASIC18.63■□□□□ 0.57
CTCFP49711 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC18.63■□□□□ 0.57
CTCFP49711 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC18.63■□□□□ 0.57
CTCFP49711 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTCFP49711 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
CTCFP49711 AC006480.2-201ENST00000609770 1337 ntBASIC18.63■□□□□ 0.57
CTCFP49711 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTCFP49711 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CTCFP49711 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CTCFP49711 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTCFP49711 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC18.63■□□□□ 0.57
CTCFP49711 FST-202ENST00000396947 2538 ntTSL 5 BASIC18.63■□□□□ 0.57
CTCFP49711 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
CTCFP49711 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
CTCFP49711 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTCFP49711 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTCFP49711 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC18.63■□□□□ 0.57
CTCFP49711 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTCFP49711 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTCFP49711 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CTCFP49711 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTCFP49711 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC18.63■□□□□ 0.57
CTCFP49711 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTCFP49711 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTCFP49711 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTCFP49711 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC18.62■□□□□ 0.57
CTCFP49711 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC18.62■□□□□ 0.57
CTCFP49711 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
CTCFP49711 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTCFP49711 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTCFP49711 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CTCFP49711 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC18.62■□□□□ 0.57
CTCFP49711 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC18.62■□□□□ 0.57
CTCFP49711 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC18.62■□□□□ 0.57
CTCFP49711 MTX1P1-201ENST00000440904 838 ntBASIC18.62■□□□□ 0.57
CTCFP49711 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC18.62■□□□□ 0.57
CTCFP49711 AL096772.1-201ENST00000451135 781 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CTCFP49711 KRT18P66-201ENST00000452970 1269 ntBASIC18.62■□□□□ 0.57
CTCFP49711 AC106760.1-201ENST00000508690 800 ntBASIC18.62■□□□□ 0.57
CTCFP49711 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CTCFP49711 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC18.62■□□□□ 0.57
CTCFP49711 PGAM1P5-201ENST00000548011 764 ntBASIC18.62■□□□□ 0.57
CTCFP49711 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC18.62■□□□□ 0.57
CTCFP49711 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CTCFP49711 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CTCFP49711 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC18.62■□□□□ 0.57
CTCFP49711 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTCFP49711 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTCFP49711 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CTCFP49711 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC18.62■□□□□ 0.57
CTCFP49711 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CTCFP49711 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CTCFP49711 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CTCFP49711 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTCFP49711 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTCFP49711 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTCFP49711 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CTCFP49711 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTCFP49711 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC18.61■□□□□ 0.57
CTCFP49711 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC18.61■□□□□ 0.57
CTCFP49711 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CTCFP49711 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CTCFP49711 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
CTCFP49711 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
CTCFP49711 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC18.61■□□□□ 0.57
CTCFP49711 KRT18P55-202ENST00000578578 1546 ntBASIC18.61■□□□□ 0.57
CTCFP49711 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CTCFP49711 FOS-208ENST00000555686 1496 ntTSL 2 BASIC18.61■□□□□ 0.57
CTCFP49711 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CTCFP49711 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CTCFP49711 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CTCFP49711 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CTCFP49711 AC069218.1-201ENST00000435269 762 ntBASIC18.61■□□□□ 0.57
CTCFP49711 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC18.61■□□□□ 0.57
CTCFP49711 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC18.61■□□□□ 0.57
CTCFP49711 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC18.61■□□□□ 0.57
CTCFP49711 AC134698.3-201ENST00000523880 214 ntBASIC18.61■□□□□ 0.57
CTCFP49711 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC18.61■□□□□ 0.57
CTCFP49711 PRKXP1-201ENST00000561423 1122 ntBASIC18.61■□□□□ 0.57
CTCFP49711 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC18.61■□□□□ 0.57
CTCFP49711 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC18.61■□□□□ 0.57
CTCFP49711 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC18.61■□□□□ 0.57
CTCFP49711 AC079336.7-201ENST00000623428 1078 ntBASIC18.61■□□□□ 0.57
CTCFP49711 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CTCFP49711 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CTCFP49711 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CTCFP49711 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CTCFP49711 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CTCFP49711 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC18.61■□□□□ 0.57
CTCFP49711 REXO1L11P-201ENST00000620964 1927 ntBASIC18.61■□□□□ 0.57
CTCFP49711 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CTCFP49711 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
CTCFP49711 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC18.6■□□□□ 0.57
CTCFP49711 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CTCFP49711 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
CTCFP49711 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms