Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AL139400.1-201ENST00000366220 510 ntBASIC15.88■□□□□ 0.13
SHMT2P34897 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
SHMT2P34897 PON3-203ENST00000427422 894 ntTSL 3 BASIC15.88■□□□□ 0.13
SHMT2P34897 GPS2P2-201ENST00000430745 888 ntBASIC15.88■□□□□ 0.13
SHMT2P34897 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SHMT2P34897 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
SHMT2P34897 ALG1L8P-201ENST00000533887 760 ntBASIC15.88■□□□□ 0.13
SHMT2P34897 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC15.88■□□□□ 0.13
SHMT2P34897 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
SHMT2P34897 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SHMT2P34897 AP001059.3-201ENST00000619053 235 ntBASIC15.88■□□□□ 0.13
SHMT2P34897 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC15.88■□□□□ 0.13
SHMT2P34897 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SHMT2P34897 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SHMT2P34897 U82695.1-201ENST00000635752 1889 ntBASIC15.88■□□□□ 0.13
SHMT2P34897 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SHMT2P34897 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SHMT2P34897 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
SHMT2P34897 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
SHMT2P34897 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SHMT2P34897 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SHMT2P34897 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
SHMT2P34897 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC15.88■□□□□ 0.13
SHMT2P34897 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC15.87■□□□□ 0.13
SHMT2P34897 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHMT2P34897 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC15.87■□□□□ 0.13
SHMT2P34897 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC15.87■□□□□ 0.13
SHMT2P34897 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
SHMT2P34897 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHMT2P34897 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHMT2P34897 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC15.87■□□□□ 0.13
SHMT2P34897 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SHMT2P34897 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHMT2P34897 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC15.87■□□□□ 0.13
SHMT2P34897 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHMT2P34897 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SHMT2P34897 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC15.87■□□□□ 0.13
SHMT2P34897 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHMT2P34897 FAM220BP-201ENST00000377689 816 ntBASIC15.87■□□□□ 0.13
SHMT2P34897 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SHMT2P34897 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC15.87■□□□□ 0.13
SHMT2P34897 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC15.87■□□□□ 0.13
SHMT2P34897 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SHMT2P34897 GATD1-206ENST00000526325 756 ntTSL 5 BASIC15.87■□□□□ 0.13
SHMT2P34897 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC15.87■□□□□ 0.13
SHMT2P34897 LSM12-202ENST00000585388 942 ntTSL 3 BASIC15.87■□□□□ 0.13
SHMT2P34897 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC15.87■□□□□ 0.13
SHMT2P34897 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC15.87■□□□□ 0.13
SHMT2P34897 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SHMT2P34897 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC15.87■□□□□ 0.13
SHMT2P34897 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHMT2P34897 AC005622.1-201ENST00000636801 1703 ntBASIC15.87■□□□□ 0.13
SHMT2P34897 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC15.87■□□□□ 0.13
SHMT2P34897 FOXO1B-201ENST00000504678 1527 ntBASIC15.87■□□□□ 0.13
SHMT2P34897 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC15.87■□□□□ 0.13
SHMT2P34897 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHMT2P34897 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHMT2P34897 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
SHMT2P34897 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHMT2P34897 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC15.87■□□□□ 0.13
SHMT2P34897 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SHMT2P34897 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHMT2P34897 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
SHMT2P34897 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHMT2P34897 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHMT2P34897 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC15.87■□□□□ 0.13
SHMT2P34897 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
SHMT2P34897 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHMT2P34897 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHMT2P34897 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC15.86■□□□□ 0.13
SHMT2P34897 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
SHMT2P34897 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
SHMT2P34897 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHMT2P34897 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHMT2P34897 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC15.86■□□□□ 0.13
SHMT2P34897 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
SHMT2P34897 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
SHMT2P34897 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHMT2P34897 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHMT2P34897 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHMT2P34897 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHMT2P34897 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC15.86■□□□□ 0.13
SHMT2P34897 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC15.86■□□□□ 0.13
SHMT2P34897 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
SHMT2P34897 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC15.86■□□□□ 0.13
SHMT2P34897 GGCT-205ENST00000409436 954 ntTSL 3 BASIC15.86■□□□□ 0.13
SHMT2P34897 SPDYE7P-202ENST00000420373 878 ntBASIC15.86■□□□□ 0.13
SHMT2P34897 PMS2P2-201ENST00000425039 1128 ntBASIC15.86■□□□□ 0.13
SHMT2P34897 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
SHMT2P34897 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC15.86■□□□□ 0.13
SHMT2P34897 AL512356.2-201ENST00000546955 174 ntBASIC15.86■□□□□ 0.13
SHMT2P34897 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
SHMT2P34897 AC026150.2-201ENST00000564693 1156 ntBASIC15.86■□□□□ 0.13
SHMT2P34897 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHMT2P34897 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHMT2P34897 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC15.86■□□□□ 0.13
SHMT2P34897 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
SHMT2P34897 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
SHMT2P34897 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC15.86■□□□□ 0.13
SHMT2P34897 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 165.1 ms