Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HOXC9P31274 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HOXC9P31274 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
HOXC9P31274 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC21.18■□□□□ 0.98
HOXC9P31274 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
HOXC9P31274 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HOXC9P31274 VDAC1P7-201ENST00000462417 847 ntBASIC21.18■□□□□ 0.98
HOXC9P31274 AP001889.1-201ENST00000525414 633 ntBASIC21.18■□□□□ 0.98
HOXC9P31274 ENPP7P5-201ENST00000541031 1031 ntBASIC21.18■□□□□ 0.98
HOXC9P31274 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC21.18■□□□□ 0.98
HOXC9P31274 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC21.18■□□□□ 0.98
HOXC9P31274 AC120045.2-201ENST00000567334 178 ntBASIC21.18■□□□□ 0.98
HOXC9P31274 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HOXC9P31274 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC21.18■□□□□ 0.98
HOXC9P31274 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC21.18■□□□□ 0.98
HOXC9P31274 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
HOXC9P31274 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
HOXC9P31274 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC21.18■□□□□ 0.98
HOXC9P31274 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC21.18■□□□□ 0.98
HOXC9P31274 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
HOXC9P31274 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HOXC9P31274 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HOXC9P31274 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC21.18■□□□□ 0.98
HOXC9P31274 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HOXC9P31274 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
HOXC9P31274 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC21.17■□□□□ 0.98
HOXC9P31274 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
HOXC9P31274 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC21.17■□□□□ 0.98
HOXC9P31274 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
HOXC9P31274 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC21.17■□□□□ 0.98
HOXC9P31274 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HOXC9P31274 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HOXC9P31274 FAM86MP-201ENST00000340703 885 ntBASIC21.17■□□□□ 0.98
HOXC9P31274 MGST3-203ENST00000367885 680 ntTSL 2 BASIC21.17■□□□□ 0.98
HOXC9P31274 STX1A-203ENST00000395155 783 ntTSL 2 BASIC21.17■□□□□ 0.98
HOXC9P31274 AC099336.1-201ENST00000417053 1171 ntBASIC21.17■□□□□ 0.98
HOXC9P31274 USB1-202ENST00000423271 1217 ntTSL 2 BASIC21.17■□□□□ 0.98
HOXC9P31274 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC21.17■□□□□ 0.98
HOXC9P31274 BCRP2-202ENST00000447763 634 ntBASIC21.17■□□□□ 0.98
HOXC9P31274 BCRP6-201ENST00000510112 632 ntBASIC21.17■□□□□ 0.98
HOXC9P31274 BCRP7-201ENST00000511549 544 ntBASIC21.17■□□□□ 0.98
HOXC9P31274 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HOXC9P31274 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
HOXC9P31274 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC21.17■□□□□ 0.98
HOXC9P31274 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC21.17■□□□□ 0.98
HOXC9P31274 AC068587.3-201ENST00000526613 355 ntBASIC21.17■□□□□ 0.98
HOXC9P31274 AL022328.1-201ENST00000610050 478 ntBASIC21.17■□□□□ 0.98
HOXC9P31274 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
HOXC9P31274 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC21.17■□□□□ 0.98
HOXC9P31274 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC21.17■□□□□ 0.98
HOXC9P31274 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC21.17■□□□□ 0.98
HOXC9P31274 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
HOXC9P31274 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
HOXC9P31274 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
HOXC9P31274 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC21.17■□□□□ 0.98
HOXC9P31274 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
HOXC9P31274 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HOXC9P31274 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HOXC9P31274 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
HOXC9P31274 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
HOXC9P31274 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HOXC9P31274 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HOXC9P31274 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HOXC9P31274 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
HOXC9P31274 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
HOXC9P31274 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
HOXC9P31274 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
HOXC9P31274 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
HOXC9P31274 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HOXC9P31274 TP73-213ENST00000604479 1623 ntTSL 5 BASIC21.16■□□□□ 0.98
HOXC9P31274 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC21.16■□□□□ 0.98
HOXC9P31274 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC21.16■□□□□ 0.98
HOXC9P31274 SOCS2P1-201ENST00000417727 557 ntBASIC21.16■□□□□ 0.98
HOXC9P31274 RPL28-203ENST00000428193 573 ntTSL 2 BASIC21.16■□□□□ 0.98
HOXC9P31274 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
HOXC9P31274 KLF2P4-201ENST00000451959 1225 ntBASIC21.16■□□□□ 0.98
HOXC9P31274 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
HOXC9P31274 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC21.16■□□□□ 0.98
HOXC9P31274 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC21.16■□□□□ 0.98
HOXC9P31274 RPL28-207ENST00000558815 616 ntTSL 2 BASIC21.16■□□□□ 0.98
HOXC9P31274 AC000095.1-201ENST00000603208 874 ntBASIC21.16■□□□□ 0.98
HOXC9P31274 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC21.16■□□□□ 0.98
HOXC9P31274 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
HOXC9P31274 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
HOXC9P31274 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HOXC9P31274 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
HOXC9P31274 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HOXC9P31274 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
HOXC9P31274 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HOXC9P31274 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
HOXC9P31274 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC21.16■□□□□ 0.98
HOXC9P31274 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
HOXC9P31274 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
HOXC9P31274 MSTO2P-201ENST00000314835 1709 ntBASIC21.15■□□□□ 0.98
HOXC9P31274 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC21.15■□□□□ 0.98
HOXC9P31274 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HOXC9P31274 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC21.15■□□□□ 0.98
HOXC9P31274 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HOXC9P31274 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HOXC9P31274 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms