Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DMBP28068 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DMBP28068 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DMBP28068 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
HLA-DMBP28068 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
HLA-DMBP28068 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DMBP28068 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC12.4□□□□□ -0.42
HLA-DMBP28068 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
HLA-DMBP28068 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC12.4□□□□□ -0.42
HLA-DMBP28068 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.43
HLA-DMBP28068 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC12.4□□□□□ -0.43
HLA-DMBP28068 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC12.4□□□□□ -0.43
HLA-DMBP28068 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
HLA-DMBP28068 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
HLA-DMBP28068 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC12.4□□□□□ -0.43
HLA-DMBP28068 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HLA-DMBP28068 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HLA-DMBP28068 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
HLA-DMBP28068 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC12.39□□□□□ -0.43
HLA-DMBP28068 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
HLA-DMBP28068 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
HLA-DMBP28068 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HLA-DMBP28068 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HLA-DMBP28068 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
HLA-DMBP28068 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
HLA-DMBP28068 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC12.39□□□□□ -0.43
HLA-DMBP28068 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
HLA-DMBP28068 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC12.39□□□□□ -0.43
HLA-DMBP28068 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC12.39□□□□□ -0.43
HLA-DMBP28068 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
HLA-DMBP28068 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HLA-DMBP28068 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
HLA-DMBP28068 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HLA-DMBP28068 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
HLA-DMBP28068 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
HLA-DMBP28068 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
HLA-DMBP28068 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC12.39□□□□□ -0.43
HLA-DMBP28068 CD99-202ENST00000381180 530 ntTSL 2 BASIC12.39□□□□□ -0.43
HLA-DMBP28068 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
HLA-DMBP28068 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
HLA-DMBP28068 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC12.39□□□□□ -0.43
HLA-DMBP28068 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC12.39□□□□□ -0.43
HLA-DMBP28068 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC12.39□□□□□ -0.43
HLA-DMBP28068 POLD4-207ENST00000531239 584 ntTSL 2 BASIC12.39□□□□□ -0.43
HLA-DMBP28068 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HLA-DMBP28068 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC12.39□□□□□ -0.43
HLA-DMBP28068 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC12.39□□□□□ -0.43
HLA-DMBP28068 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC12.39□□□□□ -0.43
HLA-DMBP28068 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC12.39□□□□□ -0.43
HLA-DMBP28068 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HLA-DMBP28068 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HLA-DMBP28068 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HLA-DMBP28068 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
HLA-DMBP28068 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC12.39□□□□□ -0.43
HLA-DMBP28068 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HLA-DMBP28068 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
HLA-DMBP28068 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
HLA-DMBP28068 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HLA-DMBP28068 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC12.39□□□□□ -0.43
HLA-DMBP28068 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HLA-DMBP28068 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC12.39□□□□□ -0.43
HLA-DMBP28068 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC12.39□□□□□ -0.43
HLA-DMBP28068 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC12.39□□□□□ -0.43
HLA-DMBP28068 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC12.39□□□□□ -0.43
HLA-DMBP28068 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
HLA-DMBP28068 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
HLA-DMBP28068 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
HLA-DMBP28068 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
HLA-DMBP28068 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
HLA-DMBP28068 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
HLA-DMBP28068 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
HLA-DMBP28068 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
HLA-DMBP28068 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
HLA-DMBP28068 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HLA-DMBP28068 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC12.38□□□□□ -0.43
HLA-DMBP28068 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HLA-DMBP28068 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC12.38□□□□□ -0.43
HLA-DMBP28068 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
HLA-DMBP28068 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
HLA-DMBP28068 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC12.38□□□□□ -0.43
HLA-DMBP28068 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
HLA-DMBP28068 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC12.38□□□□□ -0.43
HLA-DMBP28068 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC12.38□□□□□ -0.43
HLA-DMBP28068 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
HLA-DMBP28068 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
HLA-DMBP28068 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
HLA-DMBP28068 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
HLA-DMBP28068 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
HLA-DMBP28068 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
HLA-DMBP28068 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
HLA-DMBP28068 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HLA-DMBP28068 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HLA-DMBP28068 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
HLA-DMBP28068 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC12.38□□□□□ -0.43
HLA-DMBP28068 FABP5-202ENST00000396359 986 ntTSL 5 BASIC12.38□□□□□ -0.43
HLA-DMBP28068 RPP21-221ENST00000428040 594 ntTSL 2 BASIC12.38□□□□□ -0.43
HLA-DMBP28068 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
HLA-DMBP28068 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HLA-DMBP28068 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
HLA-DMBP28068 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC12.38□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 64.5 ms