Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
APOEP02649 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
APOEP02649 AL139400.1-201ENST00000366220 510 ntBASIC16.99■□□□□ 0.31
APOEP02649 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
APOEP02649 HNRNPFP1-201ENST00000391730 1133 ntBASIC16.99■□□□□ 0.31
APOEP02649 PMS2P2-201ENST00000425039 1128 ntBASIC16.99■□□□□ 0.31
APOEP02649 GPS2P2-201ENST00000430745 888 ntBASIC16.99■□□□□ 0.31
APOEP02649 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC16.99■□□□□ 0.31
APOEP02649 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC16.99■□□□□ 0.31
APOEP02649 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC16.99■□□□□ 0.31
APOEP02649 AP001059.3-201ENST00000619053 235 ntBASIC16.99■□□□□ 0.31
APOEP02649 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.99■□□□□ 0.31
APOEP02649 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC16.99■□□□□ 0.31
APOEP02649 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
APOEP02649 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
APOEP02649 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
APOEP02649 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC16.99■□□□□ 0.31
APOEP02649 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
APOEP02649 FOXO1B-201ENST00000504678 1527 ntBASIC16.99■□□□□ 0.31
APOEP02649 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC16.99■□□□□ 0.31
APOEP02649 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC16.99■□□□□ 0.31
APOEP02649 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
APOEP02649 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
APOEP02649 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
APOEP02649 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC16.99■□□□□ 0.31
APOEP02649 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC16.99■□□□□ 0.31
APOEP02649 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
APOEP02649 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
APOEP02649 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
APOEP02649 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
APOEP02649 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC16.99■□□□□ 0.31
APOEP02649 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
APOEP02649 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
APOEP02649 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
APOEP02649 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC16.98■□□□□ 0.31
APOEP02649 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
APOEP02649 AC068587.6-202ENST00000641839 5619 ntBASIC16.98■□□□□ 0.31
APOEP02649 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC16.98■□□□□ 0.31
APOEP02649 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC16.98■□□□□ 0.31
APOEP02649 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
APOEP02649 AC007950.2-201ENST00000615045 2347 ntBASIC16.98■□□□□ 0.31
APOEP02649 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
APOEP02649 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
APOEP02649 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC16.98■□□□□ 0.31
APOEP02649 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
APOEP02649 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
APOEP02649 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
APOEP02649 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
APOEP02649 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
APOEP02649 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC16.98■□□□□ 0.31
APOEP02649 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC16.98■□□□□ 0.31
APOEP02649 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC16.98■□□□□ 0.31
APOEP02649 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC16.98■□□□□ 0.31
APOEP02649 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
APOEP02649 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
APOEP02649 RNA5SP410-201ENST00000516285 106 ntBASIC16.98■□□□□ 0.31
APOEP02649 AC109322.1-201ENST00000524499 1264 ntBASIC16.98■□□□□ 0.31
APOEP02649 GATD1-206ENST00000526325 756 ntTSL 5 BASIC16.98■□□□□ 0.31
APOEP02649 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC16.98■□□□□ 0.31
APOEP02649 AC026150.2-201ENST00000564693 1156 ntBASIC16.98■□□□□ 0.31
APOEP02649 LSM12-202ENST00000585388 942 ntTSL 3 BASIC16.98■□□□□ 0.31
APOEP02649 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
APOEP02649 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC16.98■□□□□ 0.31
APOEP02649 AC093028.1-201ENST00000622998 982 ntBASIC16.98■□□□□ 0.31
APOEP02649 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
APOEP02649 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
APOEP02649 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
APOEP02649 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC16.98■□□□□ 0.31
APOEP02649 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
APOEP02649 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
APOEP02649 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
APOEP02649 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
APOEP02649 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
APOEP02649 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
APOEP02649 GOLGA2P9-201ENST00000596977 1937 ntBASIC16.98■□□□□ 0.31
APOEP02649 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
APOEP02649 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
APOEP02649 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
APOEP02649 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC16.97■□□□□ 0.31
APOEP02649 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
APOEP02649 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC16.97■□□□□ 0.31
APOEP02649 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC16.97■□□□□ 0.31
APOEP02649 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
APOEP02649 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
APOEP02649 AL589702.1-201ENST00000641229 1509 ntBASIC16.97■□□□□ 0.31
APOEP02649 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC16.97■□□□□ 0.31
APOEP02649 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC16.97■□□□□ 0.31
APOEP02649 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC16.97■□□□□ 0.31
APOEP02649 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
APOEP02649 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
APOEP02649 FAM220BP-201ENST00000377689 816 ntBASIC16.97■□□□□ 0.31
APOEP02649 GGCT-205ENST00000409436 954 ntTSL 3 BASIC16.97■□□□□ 0.31
APOEP02649 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
APOEP02649 SPDYE7P-202ENST00000420373 878 ntBASIC16.97■□□□□ 0.31
APOEP02649 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC16.97■□□□□ 0.31
APOEP02649 SPDYE14P-201ENST00000442619 822 ntBASIC16.97■□□□□ 0.31
APOEP02649 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC16.97■□□□□ 0.31
APOEP02649 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC16.97■□□□□ 0.31
APOEP02649 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC16.97■□□□□ 0.31
APOEP02649 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms