Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
TOP3BO95985 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TOP3BO95985 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TOP3BO95985 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
TOP3BO95985 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TOP3BO95985 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
TOP3BO95985 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC16.64■□□□□ 0.25
TOP3BO95985 AC144831.1-201ENST00000573312 2656 ntBASIC16.63■□□□□ 0.25
TOP3BO95985 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
TOP3BO95985 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TOP3BO95985 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
TOP3BO95985 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC16.63■□□□□ 0.25
TOP3BO95985 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
TOP3BO95985 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TOP3BO95985 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC16.63■□□□□ 0.25
TOP3BO95985 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
TOP3BO95985 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TOP3BO95985 COX5BP8-201ENST00000416911 349 ntBASIC16.63■□□□□ 0.25
TOP3BO95985 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
TOP3BO95985 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC16.63■□□□□ 0.25
TOP3BO95985 KRT18P32-201ENST00000424695 1287 ntBASIC16.63■□□□□ 0.25
TOP3BO95985 GPS2P2-201ENST00000430745 888 ntBASIC16.63■□□□□ 0.25
TOP3BO95985 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC16.63■□□□□ 0.25
TOP3BO95985 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC16.63■□□□□ 0.25
TOP3BO95985 SPDYE11-202ENST00000450699 704 ntBASIC16.63■□□□□ 0.25
TOP3BO95985 AL513480.1-201ENST00000451731 511 ntBASIC16.63■□□□□ 0.25
TOP3BO95985 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
TOP3BO95985 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TOP3BO95985 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC16.63■□□□□ 0.25
TOP3BO95985 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
TOP3BO95985 SPDYE9P-201ENST00000570642 692 ntBASIC16.63■□□□□ 0.25
TOP3BO95985 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC16.63■□□□□ 0.25
TOP3BO95985 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TOP3BO95985 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TOP3BO95985 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC16.63■□□□□ 0.25
TOP3BO95985 SPDYE10P-202ENST00000612005 668 ntBASIC16.63■□□□□ 0.25
TOP3BO95985 SPDYE8P-202ENST00000612377 668 ntBASIC16.63■□□□□ 0.25
TOP3BO95985 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC16.63■□□□□ 0.25
TOP3BO95985 AL139011.1-202ENST00000642063 584 ntBASIC16.63■□□□□ 0.25
TOP3BO95985 DBET-201ENST00000630918 3363 ntBASIC16.63■□□□□ 0.25
TOP3BO95985 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.63■□□□□ 0.25
TOP3BO95985 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TOP3BO95985 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
TOP3BO95985 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TOP3BO95985 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
TOP3BO95985 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC16.63■□□□□ 0.25
TOP3BO95985 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
TOP3BO95985 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TOP3BO95985 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TOP3BO95985 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
TOP3BO95985 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
TOP3BO95985 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TOP3BO95985 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
TOP3BO95985 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
TOP3BO95985 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
TOP3BO95985 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TOP3BO95985 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TOP3BO95985 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TOP3BO95985 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TOP3BO95985 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC16.62■□□□□ 0.25
TOP3BO95985 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TOP3BO95985 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
TOP3BO95985 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
TOP3BO95985 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TOP3BO95985 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.62■□□□□ 0.25
TOP3BO95985 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TOP3BO95985 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TOP3BO95985 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC16.62■□□□□ 0.25
TOP3BO95985 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC16.62■□□□□ 0.25
TOP3BO95985 RN7SL692P-201ENST00000464677 288 ntBASIC16.62■□□□□ 0.25
TOP3BO95985 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC16.62■□□□□ 0.25
TOP3BO95985 SERBP1P5-201ENST00000510079 1181 ntBASIC16.62■□□□□ 0.25
TOP3BO95985 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.62■□□□□ 0.25
TOP3BO95985 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC16.62■□□□□ 0.25
TOP3BO95985 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TOP3BO95985 AC099522.2-201ENST00000607001 744 ntBASIC16.62■□□□□ 0.25
TOP3BO95985 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC16.62■□□□□ 0.25
TOP3BO95985 AL662799.1-202ENST00000614205 422 ntBASIC16.62■□□□□ 0.25
TOP3BO95985 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TOP3BO95985 MIR6799-201ENST00000620297 69 ntBASIC16.62■□□□□ 0.25
TOP3BO95985 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
TOP3BO95985 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TOP3BO95985 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TOP3BO95985 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TOP3BO95985 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TOP3BO95985 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC16.62■□□□□ 0.25
TOP3BO95985 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TOP3BO95985 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TOP3BO95985 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TOP3BO95985 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
TOP3BO95985 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
TOP3BO95985 TOP3BP1-201ENST00000420768 1380 ntBASIC16.62■□□□□ 0.25
TOP3BO95985 TDG-209ENST00000544861 1387 ntTSL 2 BASIC16.62■□□□□ 0.25
TOP3BO95985 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
TOP3BO95985 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
TOP3BO95985 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TOP3BO95985 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TOP3BO95985 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
TOP3BO95985 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
TOP3BO95985 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms