Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC18.67■□□□□ 0.58
CTDNEP1O95476 GATD1-206ENST00000526325 756 ntTSL 5 BASIC18.67■□□□□ 0.58
CTDNEP1O95476 ALG1L8P-201ENST00000533887 760 ntBASIC18.67■□□□□ 0.58
CTDNEP1O95476 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CTDNEP1O95476 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC18.67■□□□□ 0.58
CTDNEP1O95476 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC18.67■□□□□ 0.58
CTDNEP1O95476 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC18.67■□□□□ 0.58
CTDNEP1O95476 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC18.67■□□□□ 0.58
CTDNEP1O95476 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CTDNEP1O95476 AC055717.3-201ENST00000622967 595 ntBASIC18.67■□□□□ 0.58
CTDNEP1O95476 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC18.67■□□□□ 0.58
CTDNEP1O95476 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC18.67■□□□□ 0.58
CTDNEP1O95476 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CTDNEP1O95476 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CTDNEP1O95476 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CTDNEP1O95476 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CTDNEP1O95476 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CTDNEP1O95476 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CTDNEP1O95476 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC18.67■□□□□ 0.58
CTDNEP1O95476 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
CTDNEP1O95476 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CTDNEP1O95476 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CTDNEP1O95476 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CTDNEP1O95476 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CTDNEP1O95476 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CTDNEP1O95476 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC18.67■□□□□ 0.58
CTDNEP1O95476 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CTDNEP1O95476 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CTDNEP1O95476 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
CTDNEP1O95476 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC18.66■□□□□ 0.58
CTDNEP1O95476 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC18.66■□□□□ 0.58
CTDNEP1O95476 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CTDNEP1O95476 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CTDNEP1O95476 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CTDNEP1O95476 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CTDNEP1O95476 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
CTDNEP1O95476 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
CTDNEP1O95476 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC18.66■□□□□ 0.58
CTDNEP1O95476 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
CTDNEP1O95476 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CTDNEP1O95476 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC18.66■□□□□ 0.58
CTDNEP1O95476 SPDYE14P-201ENST00000442619 822 ntBASIC18.66■□□□□ 0.58
CTDNEP1O95476 EEF1DP4-201ENST00000446006 880 ntBASIC18.66■□□□□ 0.58
CTDNEP1O95476 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC18.66■□□□□ 0.58
CTDNEP1O95476 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
CTDNEP1O95476 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CTDNEP1O95476 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC18.66■□□□□ 0.58
CTDNEP1O95476 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC18.66■□□□□ 0.58
CTDNEP1O95476 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC18.66■□□□□ 0.58
CTDNEP1O95476 RAB34-224ENST00000636513 888 ntTSL 5 BASIC18.66■□□□□ 0.58
CTDNEP1O95476 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CTDNEP1O95476 AC020658.6-201ENST00000623564 1870 ntBASIC18.66■□□□□ 0.58
CTDNEP1O95476 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CTDNEP1O95476 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CTDNEP1O95476 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CTDNEP1O95476 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CTDNEP1O95476 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC18.66■□□□□ 0.58
CTDNEP1O95476 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CTDNEP1O95476 AC092127.1-201ENST00000567093 3455 ntBASIC18.66■□□□□ 0.58
CTDNEP1O95476 SSR4P1-203ENST00000599569 2260 ntBASIC18.66■□□□□ 0.58
CTDNEP1O95476 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CTDNEP1O95476 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC18.66■□□□□ 0.58
CTDNEP1O95476 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC18.66■□□□□ 0.58
CTDNEP1O95476 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CTDNEP1O95476 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC18.66■□□□□ 0.58
CTDNEP1O95476 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CTDNEP1O95476 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CTDNEP1O95476 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
CTDNEP1O95476 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CTDNEP1O95476 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC18.65■□□□□ 0.58
CTDNEP1O95476 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CTDNEP1O95476 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
CTDNEP1O95476 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CTDNEP1O95476 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC18.65■□□□□ 0.58
CTDNEP1O95476 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CTDNEP1O95476 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC18.65■□□□□ 0.58
CTDNEP1O95476 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
CTDNEP1O95476 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CTDNEP1O95476 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
CTDNEP1O95476 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CTDNEP1O95476 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
CTDNEP1O95476 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC18.65■□□□□ 0.58
CTDNEP1O95476 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC18.65■□□□□ 0.58
CTDNEP1O95476 DHDH-204ENST00000523250 634 ntTSL 5 BASIC18.65■□□□□ 0.58
CTDNEP1O95476 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC18.65■□□□□ 0.58
CTDNEP1O95476 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC18.65■□□□□ 0.58
CTDNEP1O95476 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC18.65■□□□□ 0.58
CTDNEP1O95476 TSFM-210ENST00000550559 897 ntTSL 5 BASIC18.65■□□□□ 0.58
CTDNEP1O95476 MAX-210ENST00000555419 765 ntTSL 5 BASIC18.65■□□□□ 0.58
CTDNEP1O95476 NAA38-207ENST00000576861 556 ntTSL 3 BASIC18.65■□□□□ 0.58
CTDNEP1O95476 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CTDNEP1O95476 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CTDNEP1O95476 FLII-221ENST00000578558 2377 ntTSL 5 BASIC18.65■□□□□ 0.58
CTDNEP1O95476 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CTDNEP1O95476 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CTDNEP1O95476 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC18.65■□□□□ 0.58
CTDNEP1O95476 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
CTDNEP1O95476 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CTDNEP1O95476 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CTDNEP1O95476 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms