Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC14.9□□□□□ -0.02
NKX2-2O95096 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
NKX2-2O95096 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NKX2-2O95096 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
NKX2-2O95096 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
NKX2-2O95096 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
NKX2-2O95096 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NKX2-2O95096 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC14.9□□□□□ -0.02
NKX2-2O95096 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
NKX2-2O95096 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NKX2-2O95096 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NKX2-2O95096 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
NKX2-2O95096 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NKX2-2O95096 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NKX2-2O95096 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
NKX2-2O95096 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NKX2-2O95096 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
NKX2-2O95096 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC14.9□□□□□ -0.02
NKX2-2O95096 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC14.9□□□□□ -0.02
NKX2-2O95096 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC14.9□□□□□ -0.02
NKX2-2O95096 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC14.9□□□□□ -0.02
NKX2-2O95096 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC14.9□□□□□ -0.02
NKX2-2O95096 AC026150.2-201ENST00000564693 1156 ntBASIC14.9□□□□□ -0.02
NKX2-2O95096 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC14.9□□□□□ -0.02
NKX2-2O95096 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC14.9□□□□□ -0.02
NKX2-2O95096 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
NKX2-2O95096 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
NKX2-2O95096 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NKX2-2O95096 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC14.9□□□□□ -0.02
NKX2-2O95096 AC018529.1-201ENST00000613063 361 ntBASIC14.9□□□□□ -0.02
NKX2-2O95096 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
NKX2-2O95096 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC14.9□□□□□ -0.02
NKX2-2O95096 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC14.9□□□□□ -0.02
NKX2-2O95096 RAB34-224ENST00000636513 888 ntTSL 5 BASIC14.9□□□□□ -0.02
NKX2-2O95096 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
NKX2-2O95096 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
NKX2-2O95096 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC14.9□□□□□ -0.02
NKX2-2O95096 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
NKX2-2O95096 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC14.9□□□□□ -0.02
NKX2-2O95096 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
NKX2-2O95096 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
NKX2-2O95096 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
NKX2-2O95096 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
NKX2-2O95096 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
NKX2-2O95096 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
NKX2-2O95096 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NKX2-2O95096 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NKX2-2O95096 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NKX2-2O95096 CYP4F24P-201ENST00000586049 1580 ntBASIC14.9□□□□□ -0.02
NKX2-2O95096 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC14.9□□□□□ -0.02
NKX2-2O95096 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
NKX2-2O95096 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
NKX2-2O95096 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
NKX2-2O95096 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
NKX2-2O95096 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
NKX2-2O95096 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
NKX2-2O95096 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
NKX2-2O95096 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
NKX2-2O95096 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
NKX2-2O95096 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
NKX2-2O95096 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
NKX2-2O95096 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
NKX2-2O95096 GOLGA6L17P-202ENST00000614358 1398 ntBASIC14.89□□□□□ -0.03
NKX2-2O95096 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
NKX2-2O95096 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
NKX2-2O95096 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
NKX2-2O95096 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
NKX2-2O95096 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
NKX2-2O95096 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
NKX2-2O95096 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
NKX2-2O95096 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
NKX2-2O95096 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
NKX2-2O95096 RPL30-202ENST00000396070 440 ntTSL 2 BASIC14.89□□□□□ -0.03
NKX2-2O95096 AL353705.2-201ENST00000428243 662 ntBASIC14.89□□□□□ -0.03
NKX2-2O95096 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC14.89□□□□□ -0.03
NKX2-2O95096 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC14.89□□□□□ -0.03
NKX2-2O95096 CCDC74BP1-201ENST00000508880 1123 ntBASIC14.89□□□□□ -0.03
NKX2-2O95096 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC14.89□□□□□ -0.03
NKX2-2O95096 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
NKX2-2O95096 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC14.89□□□□□ -0.03
NKX2-2O95096 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
NKX2-2O95096 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
NKX2-2O95096 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
NKX2-2O95096 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
NKX2-2O95096 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
NKX2-2O95096 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC14.89□□□□□ -0.03
NKX2-2O95096 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
NKX2-2O95096 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
NKX2-2O95096 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
NKX2-2O95096 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
NKX2-2O95096 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
NKX2-2O95096 HLA-DQB2-231ENST00000435145 2026 ntBASIC14.88□□□□□ -0.03
NKX2-2O95096 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
NKX2-2O95096 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC14.88□□□□□ -0.03
NKX2-2O95096 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC14.88□□□□□ -0.03
NKX2-2O95096 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
NKX2-2O95096 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
NKX2-2O95096 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
NKX2-2O95096 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
NKX2-2O95096 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC14.88□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 77 ms