Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
USH2AO75445 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC7.06□□□□□ -1.28
USH2AO75445 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC7.06□□□□□ -1.28
USH2AO75445 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC7.06□□□□□ -1.28
USH2AO75445 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
USH2AO75445 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC7.06□□□□□ -1.28
USH2AO75445 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC7.06□□□□□ -1.28
USH2AO75445 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC7.06□□□□□ -1.28
USH2AO75445 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC7.06□□□□□ -1.28
USH2AO75445 EMP1-203ENST00000431267 1039 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
USH2AO75445 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
USH2AO75445 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
USH2AO75445 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC7.06□□□□□ -1.28
USH2AO75445 AL160314.3-201ENST00000556041 767 ntBASIC7.06□□□□□ -1.28
USH2AO75445 AP001029.1-201ENST00000589843 168 ntTSL 3 BASIC7.06□□□□□ -1.28
USH2AO75445 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC7.06□□□□□ -1.28
USH2AO75445 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC7.06□□□□□ -1.28
USH2AO75445 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC7.06□□□□□ -1.28
USH2AO75445 AC233280.19-201ENST00000633223 136 ntBASIC7.06□□□□□ -1.28
USH2AO75445 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC7.06□□□□□ -1.28
USH2AO75445 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC7.06□□□□□ -1.28
USH2AO75445 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
USH2AO75445 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
USH2AO75445 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC7.06□□□□□ -1.28
USH2AO75445 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC7.06□□□□□ -1.28
USH2AO75445 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC7.06□□□□□ -1.28
USH2AO75445 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC7.06□□□□□ -1.28
USH2AO75445 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC7.06□□□□□ -1.28
USH2AO75445 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC7.06□□□□□ -1.28
USH2AO75445 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC7.06□□□□□ -1.28
USH2AO75445 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC7.06□□□□□ -1.28
USH2AO75445 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
USH2AO75445 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC7.06□□□□□ -1.28
USH2AO75445 AL354751.1-201ENST00000412768 1863 ntBASIC7.06□□□□□ -1.28
USH2AO75445 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
USH2AO75445 TISP43-201ENST00000409793 538 ntTSL 4 BASIC7.06□□□□□ -1.28
USH2AO75445 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
USH2AO75445 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC7.06□□□□□ -1.28
USH2AO75445 AC023090.1-201ENST00000592906 502 ntTSL 3 BASIC7.06□□□□□ -1.28
USH2AO75445 KRT18P55-202ENST00000578578 1546 ntBASIC7.06□□□□□ -1.28
USH2AO75445 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC7.06□□□□□ -1.28
USH2AO75445 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
USH2AO75445 AC007787.1-201ENST00000588095 1583 ntBASIC7.06□□□□□ -1.28
USH2AO75445 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
USH2AO75445 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC7.06□□□□□ -1.28
USH2AO75445 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
USH2AO75445 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC7.06□□□□□ -1.28
USH2AO75445 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
USH2AO75445 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC7.06□□□□□ -1.28
USH2AO75445 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC7.06□□□□□ -1.28
USH2AO75445 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC7.06□□□□□ -1.28
USH2AO75445 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC7.05□□□□□ -1.28
USH2AO75445 TP73-209ENST00000603362 1668 ntTSL 5 BASIC7.05□□□□□ -1.28
USH2AO75445 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC7.05□□□□□ -1.28
USH2AO75445 PDIA3P2-201ENST00000428073 158 ntBASIC7.05□□□□□ -1.28
USH2AO75445 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC7.05□□□□□ -1.28
USH2AO75445 AC109479.3-201ENST00000520163 360 ntTSL 3 BASIC7.05□□□□□ -1.28
USH2AO75445 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC7.05□□□□□ -1.28
USH2AO75445 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC7.05□□□□□ -1.28
USH2AO75445 AF111169.2-201ENST00000553758 721 ntTSL 3 BASIC7.05□□□□□ -1.28
USH2AO75445 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC7.05□□□□□ -1.28
USH2AO75445 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC7.05□□□□□ -1.28
USH2AO75445 LINC01451-201ENST00000623792 534 ntBASIC7.05□□□□□ -1.28
USH2AO75445 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC7.05□□□□□ -1.28
USH2AO75445 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC7.05□□□□□ -1.28
USH2AO75445 NME9-203ENST00000383180 2133 ntTSL 2 BASIC7.05□□□□□ -1.28
USH2AO75445 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC7.05□□□□□ -1.28
USH2AO75445 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
USH2AO75445 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC7.05□□□□□ -1.28
USH2AO75445 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC7.05□□□□□ -1.28
USH2AO75445 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC7.05□□□□□ -1.28
USH2AO75445 RERG-209ENST00000546331 1383 ntTSL 2 BASIC7.05□□□□□ -1.28
USH2AO75445 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
USH2AO75445 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC7.05□□□□□ -1.28
USH2AO75445 DPM3-202ENST00000368399 517 ntBASIC7.05□□□□□ -1.28
USH2AO75445 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
USH2AO75445 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC7.05□□□□□ -1.28
USH2AO75445 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC7.05□□□□□ -1.28
USH2AO75445 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC7.05□□□□□ -1.28
USH2AO75445 EIF5A2-205ENST00000487522 565 ntTSL 3 BASIC7.05□□□□□ -1.28
USH2AO75445 GAPDHP40-201ENST00000505218 1006 ntBASIC7.05□□□□□ -1.28
USH2AO75445 AC019193.1-201ENST00000506678 823 ntBASIC7.05□□□□□ -1.28
USH2AO75445 AC116345.2-201ENST00000512837 523 ntBASIC7.05□□□□□ -1.28
USH2AO75445 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC7.05□□□□□ -1.28
USH2AO75445 AP003171.2-201ENST00000528208 925 ntBASIC7.05□□□□□ -1.28
USH2AO75445 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC7.05□□□□□ -1.28
USH2AO75445 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC7.05□□□□□ -1.28
USH2AO75445 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC7.05□□□□□ -1.28
USH2AO75445 AC025271.4-201ENST00000621477 1726 ntBASIC7.05□□□□□ -1.28
USH2AO75445 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC7.05□□□□□ -1.28
USH2AO75445 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
USH2AO75445 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
USH2AO75445 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
USH2AO75445 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC7.05□□□□□ -1.28
USH2AO75445 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
USH2AO75445 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
USH2AO75445 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC7.05□□□□□ -1.28
USH2AO75445 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC7.05□□□□□ -1.28
USH2AO75445 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC7.05□□□□□ -1.28
USH2AO75445 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC7.05□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms