Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
LMX1BO60663 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
LMX1BO60663 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC14.27□□□□□ -0.12
LMX1BO60663 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
LMX1BO60663 ACE-203ENST00000413513 2237 ntTSL 2 BASIC14.27□□□□□ -0.12
LMX1BO60663 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
LMX1BO60663 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
LMX1BO60663 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC14.27□□□□□ -0.12
LMX1BO60663 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC14.27□□□□□ -0.12
LMX1BO60663 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC14.27□□□□□ -0.12
LMX1BO60663 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC14.27□□□□□ -0.12
LMX1BO60663 AC069224.1-201ENST00000566372 1715 ntBASIC14.27□□□□□ -0.12
LMX1BO60663 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
LMX1BO60663 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
LMX1BO60663 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
LMX1BO60663 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
LMX1BO60663 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
LMX1BO60663 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
LMX1BO60663 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
LMX1BO60663 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC14.27□□□□□ -0.12
LMX1BO60663 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
LMX1BO60663 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
LMX1BO60663 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
LMX1BO60663 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
LMX1BO60663 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
LMX1BO60663 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
LMX1BO60663 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
LMX1BO60663 CALY-203ENST00000368558 825 ntTSL 5 BASIC14.27□□□□□ -0.13
LMX1BO60663 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
LMX1BO60663 DPM2-202ENST00000373110 738 ntTSL 2 BASIC14.27□□□□□ -0.13
LMX1BO60663 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC14.27□□□□□ -0.13
LMX1BO60663 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC14.27□□□□□ -0.13
LMX1BO60663 CFL1-212ENST00000531413 636 ntTSL 3 BASIC14.27□□□□□ -0.13
LMX1BO60663 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC14.27□□□□□ -0.13
LMX1BO60663 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC14.27□□□□□ -0.13
LMX1BO60663 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC14.27□□□□□ -0.13
LMX1BO60663 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC14.27□□□□□ -0.13
LMX1BO60663 RPS15-212ENST00000593052 629 ntTSL 2 BASIC14.27□□□□□ -0.13
LMX1BO60663 AC020765.3-201ENST00000613051 740 ntBASIC14.27□□□□□ -0.13
LMX1BO60663 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC14.27□□□□□ -0.13
LMX1BO60663 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
LMX1BO60663 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
LMX1BO60663 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
LMX1BO60663 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
LMX1BO60663 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
LMX1BO60663 AP002414.2-201ENST00000591780 3365 ntBASIC14.27□□□□□ -0.13
LMX1BO60663 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
LMX1BO60663 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC14.27□□□□□ -0.13
LMX1BO60663 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
LMX1BO60663 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
LMX1BO60663 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
LMX1BO60663 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC14.27□□□□□ -0.13
LMX1BO60663 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
LMX1BO60663 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
LMX1BO60663 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC14.26□□□□□ -0.13
LMX1BO60663 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LMX1BO60663 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
LMX1BO60663 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
LMX1BO60663 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC14.26□□□□□ -0.13
LMX1BO60663 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LMX1BO60663 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
LMX1BO60663 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
LMX1BO60663 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LMX1BO60663 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
LMX1BO60663 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC14.26□□□□□ -0.13
LMX1BO60663 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
LMX1BO60663 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
LMX1BO60663 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LMX1BO60663 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
LMX1BO60663 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC14.26□□□□□ -0.13
LMX1BO60663 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC14.26□□□□□ -0.13
LMX1BO60663 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC14.26□□□□□ -0.13
LMX1BO60663 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
LMX1BO60663 RNF34-208ENST00000555076 593 ntTSL 3 BASIC14.26□□□□□ -0.13
LMX1BO60663 SPCS2P1-201ENST00000561636 679 ntBASIC14.26□□□□□ -0.13
LMX1BO60663 AC091812.2-201ENST00000619081 385 ntBASIC14.26□□□□□ -0.13
LMX1BO60663 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
LMX1BO60663 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
LMX1BO60663 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LMX1BO60663 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
LMX1BO60663 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LMX1BO60663 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LMX1BO60663 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
LMX1BO60663 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LMX1BO60663 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LMX1BO60663 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LMX1BO60663 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC14.26□□□□□ -0.13
LMX1BO60663 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
LMX1BO60663 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
LMX1BO60663 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
LMX1BO60663 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
LMX1BO60663 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
LMX1BO60663 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC14.26□□□□□ -0.13
LMX1BO60663 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
LMX1BO60663 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC14.25□□□□□ -0.13
LMX1BO60663 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC14.25□□□□□ -0.13
LMX1BO60663 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LMX1BO60663 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC14.25□□□□□ -0.13
LMX1BO60663 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
LMX1BO60663 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms