Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
FOXN3O00409 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
FOXN3O00409 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
FOXN3O00409 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
FOXN3O00409 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
FOXN3O00409 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
FOXN3O00409 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
FOXN3O00409 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC17.32■□□□□ 0.36
FOXN3O00409 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC17.32■□□□□ 0.36
FOXN3O00409 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC17.32■□□□□ 0.36
FOXN3O00409 GATB-205ENST00000508611 605 ntTSL 2 BASIC17.32■□□□□ 0.36
FOXN3O00409 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC17.32■□□□□ 0.36
FOXN3O00409 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC17.32■□□□□ 0.36
FOXN3O00409 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
FOXN3O00409 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
FOXN3O00409 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
FOXN3O00409 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
FOXN3O00409 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
FOXN3O00409 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC17.32■□□□□ 0.36
FOXN3O00409 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
FOXN3O00409 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC17.32■□□□□ 0.36
FOXN3O00409 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
FOXN3O00409 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
FOXN3O00409 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC17.32■□□□□ 0.36
FOXN3O00409 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
FOXN3O00409 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
FOXN3O00409 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
FOXN3O00409 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC17.31■□□□□ 0.36
FOXN3O00409 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC17.31■□□□□ 0.36
FOXN3O00409 AC011477.6-201ENST00000604980 1927 ntBASIC17.31■□□□□ 0.36
FOXN3O00409 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXN3O00409 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
FOXN3O00409 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
FOXN3O00409 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
FOXN3O00409 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC17.31■□□□□ 0.36
FOXN3O00409 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXN3O00409 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXN3O00409 PTMS-202ENST00000389462 773 ntTSL 2 BASIC17.31■□□□□ 0.36
FOXN3O00409 PP14571-201ENST00000404327 934 ntTSL 2 BASIC17.31■□□□□ 0.36
FOXN3O00409 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC17.31■□□□□ 0.36
FOXN3O00409 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC17.31■□□□□ 0.36
FOXN3O00409 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC17.31■□□□□ 0.36
FOXN3O00409 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC17.31■□□□□ 0.36
FOXN3O00409 AC024267.1-201ENST00000582320 895 ntBASIC17.31■□□□□ 0.36
FOXN3O00409 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC17.31■□□□□ 0.36
FOXN3O00409 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC17.31■□□□□ 0.36
FOXN3O00409 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC17.31■□□□□ 0.36
FOXN3O00409 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
FOXN3O00409 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXN3O00409 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXN3O00409 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
FOXN3O00409 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
FOXN3O00409 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
FOXN3O00409 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXN3O00409 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXN3O00409 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
FOXN3O00409 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC17.31■□□□□ 0.36
FOXN3O00409 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
FOXN3O00409 AP001282.1-201ENST00000531301 1499 ntBASIC17.31■□□□□ 0.36
FOXN3O00409 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
FOXN3O00409 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC17.3■□□□□ 0.36
FOXN3O00409 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
FOXN3O00409 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
FOXN3O00409 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
FOXN3O00409 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
FOXN3O00409 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
FOXN3O00409 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
FOXN3O00409 HYMAI-201ENST00000635591 3347 ntBASIC17.3■□□□□ 0.36
FOXN3O00409 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC17.3■□□□□ 0.36
FOXN3O00409 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
FOXN3O00409 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
FOXN3O00409 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
FOXN3O00409 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC17.3■□□□□ 0.36
FOXN3O00409 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC17.3■□□□□ 0.36
FOXN3O00409 ELL2P1-201ENST00000413990 1906 ntBASIC17.3■□□□□ 0.36
FOXN3O00409 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC17.3■□□□□ 0.36
FOXN3O00409 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
FOXN3O00409 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
FOXN3O00409 FAM220BP-201ENST00000377689 816 ntBASIC17.3■□□□□ 0.36
FOXN3O00409 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC17.3■□□□□ 0.36
FOXN3O00409 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
FOXN3O00409 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC17.3■□□□□ 0.36
FOXN3O00409 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC17.3■□□□□ 0.36
FOXN3O00409 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC17.3■□□□□ 0.36
FOXN3O00409 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC17.3■□□□□ 0.36
FOXN3O00409 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC17.3■□□□□ 0.36
FOXN3O00409 AC005829.1-201ENST00000570002 483 ntBASIC17.3■□□□□ 0.36
FOXN3O00409 PAM16-215ENST00000577031 548 ntTSL 4 BASIC17.3■□□□□ 0.36
FOXN3O00409 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC17.3■□□□□ 0.36
FOXN3O00409 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC17.3■□□□□ 0.36
FOXN3O00409 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC17.3■□□□□ 0.36
FOXN3O00409 AC084121.4-201ENST00000641598 221 ntBASIC17.3■□□□□ 0.36
FOXN3O00409 AF228730.8-201ENST00000642140 221 ntBASIC17.3■□□□□ 0.36
FOXN3O00409 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
FOXN3O00409 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
FOXN3O00409 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC17.3■□□□□ 0.36
FOXN3O00409 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
FOXN3O00409 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC17.3■□□□□ 0.36
FOXN3O00409 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
FOXN3O00409 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms