Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC18.83■□□□□ 0.6
CCDC39Q9UFE4 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
CCDC39Q9UFE4 TCAF2P1-201ENST00000291129 2421 ntBASIC18.83■□□□□ 0.6
CCDC39Q9UFE4 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC18.83■□□□□ 0.6
CCDC39Q9UFE4 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC39Q9UFE4 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC18.83■□□□□ 0.6
CCDC39Q9UFE4 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC39Q9UFE4 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC39Q9UFE4 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC39Q9UFE4 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC39Q9UFE4 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC39Q9UFE4 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC39Q9UFE4 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
CCDC39Q9UFE4 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC18.82■□□□□ 0.6
CCDC39Q9UFE4 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC18.82■□□□□ 0.6
CCDC39Q9UFE4 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC39Q9UFE4 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CCDC39Q9UFE4 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC39Q9UFE4 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC39Q9UFE4 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CCDC39Q9UFE4 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC18.82■□□□□ 0.6
CCDC39Q9UFE4 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC39Q9UFE4 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC39Q9UFE4 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC18.82■□□□□ 0.6
CCDC39Q9UFE4 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
CCDC39Q9UFE4 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC39Q9UFE4 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC18.82■□□□□ 0.6
CCDC39Q9UFE4 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC39Q9UFE4 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC39Q9UFE4 FAM185BP-201ENST00000443595 716 ntBASIC18.82■□□□□ 0.6
CCDC39Q9UFE4 AC009078.2-202ENST00000463353 338 ntBASIC18.82■□□□□ 0.6
CCDC39Q9UFE4 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
CCDC39Q9UFE4 CXCL1P1-201ENST00000502804 216 ntBASIC18.82■□□□□ 0.6
CCDC39Q9UFE4 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC18.82■□□□□ 0.6
CCDC39Q9UFE4 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC18.82■□□□□ 0.6
CCDC39Q9UFE4 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC18.82■□□□□ 0.6
CCDC39Q9UFE4 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC18.82■□□□□ 0.6
CCDC39Q9UFE4 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC18.82■□□□□ 0.6
CCDC39Q9UFE4 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC39Q9UFE4 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC39Q9UFE4 AL512652.2-201ENST00000625156 1716 ntBASIC18.82■□□□□ 0.6
CCDC39Q9UFE4 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC39Q9UFE4 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC18.82■□□□□ 0.6
CCDC39Q9UFE4 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC39Q9UFE4 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
CCDC39Q9UFE4 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC39Q9UFE4 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC18.81■□□□□ 0.6
CCDC39Q9UFE4 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC39Q9UFE4 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC39Q9UFE4 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC18.81■□□□□ 0.6
CCDC39Q9UFE4 AC012569.1-201ENST00000591191 1524 ntBASIC18.81■□□□□ 0.6
CCDC39Q9UFE4 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC39Q9UFE4 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC18.81■□□□□ 0.6
CCDC39Q9UFE4 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC39Q9UFE4 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC18.81■□□□□ 0.6
CCDC39Q9UFE4 CRYGEP-201ENST00000412192 528 ntBASIC18.81■□□□□ 0.6
CCDC39Q9UFE4 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CCDC39Q9UFE4 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC18.81■□□□□ 0.6
CCDC39Q9UFE4 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC39Q9UFE4 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC18.81■□□□□ 0.6
CCDC39Q9UFE4 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC39Q9UFE4 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC18.81■□□□□ 0.6
CCDC39Q9UFE4 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC18.81■□□□□ 0.6
CCDC39Q9UFE4 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC39Q9UFE4 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC18.81■□□□□ 0.6
CCDC39Q9UFE4 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC39Q9UFE4 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC39Q9UFE4 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC39Q9UFE4 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC18.81■□□□□ 0.6
CCDC39Q9UFE4 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC39Q9UFE4 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CCDC39Q9UFE4 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
CCDC39Q9UFE4 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC18.8■□□□□ 0.6
CCDC39Q9UFE4 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC18.8■□□□□ 0.6
CCDC39Q9UFE4 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC18.8■□□□□ 0.6
CCDC39Q9UFE4 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC39Q9UFE4 HLA-A-201ENST00000376802 1334 ntBASIC18.8■□□□□ 0.6
CCDC39Q9UFE4 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
CCDC39Q9UFE4 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC39Q9UFE4 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC39Q9UFE4 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC39Q9UFE4 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC39Q9UFE4 AC138035.3-201ENST00000622706 2791 ntBASIC18.8■□□□□ 0.6
CCDC39Q9UFE4 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC39Q9UFE4 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC39Q9UFE4 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC39Q9UFE4 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC39Q9UFE4 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC18.8■□□□□ 0.6
CCDC39Q9UFE4 AC009947.1-201ENST00000444350 727 ntBASIC18.8■□□□□ 0.6
CCDC39Q9UFE4 RNA5SP415-201ENST00000517246 115 ntBASIC18.8■□□□□ 0.6
CCDC39Q9UFE4 IGHV3-22-201ENST00000520721 359 ntBASIC18.8■□□□□ 0.6
CCDC39Q9UFE4 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC39Q9UFE4 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
CCDC39Q9UFE4 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
CCDC39Q9UFE4 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
CCDC39Q9UFE4 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC18.8■□□□□ 0.6
CCDC39Q9UFE4 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC18.8■□□□□ 0.6
CCDC39Q9UFE4 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
CCDC39Q9UFE4 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC39Q9UFE4 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms