Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMC4Q9NTJ3 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SMC4Q9NTJ3 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
SMC4Q9NTJ3 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMC4Q9NTJ3 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC20.78■□□□□ 0.92
SMC4Q9NTJ3 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC20.78■□□□□ 0.92
SMC4Q9NTJ3 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SMC4Q9NTJ3 RBPMS2P1-201ENST00000437762 623 ntBASIC20.78■□□□□ 0.92
SMC4Q9NTJ3 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC20.78■□□□□ 0.92
SMC4Q9NTJ3 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC20.78■□□□□ 0.92
SMC4Q9NTJ3 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMC4Q9NTJ3 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC20.78■□□□□ 0.92
SMC4Q9NTJ3 METTL23-205ENST00000588302 925 ntTSL 5 BASIC20.78■□□□□ 0.92
SMC4Q9NTJ3 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC20.78■□□□□ 0.92
SMC4Q9NTJ3 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC20.78■□□□□ 0.92
SMC4Q9NTJ3 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMC4Q9NTJ3 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC20.78■□□□□ 0.92
SMC4Q9NTJ3 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMC4Q9NTJ3 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMC4Q9NTJ3 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SMC4Q9NTJ3 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMC4Q9NTJ3 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC20.77■□□□□ 0.92
SMC4Q9NTJ3 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SMC4Q9NTJ3 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC20.77■□□□□ 0.92
SMC4Q9NTJ3 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
SMC4Q9NTJ3 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SMC4Q9NTJ3 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
SMC4Q9NTJ3 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SMC4Q9NTJ3 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
SMC4Q9NTJ3 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SMC4Q9NTJ3 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC20.77■□□□□ 0.92
SMC4Q9NTJ3 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SMC4Q9NTJ3 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SMC4Q9NTJ3 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SMC4Q9NTJ3 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC20.77■□□□□ 0.92
SMC4Q9NTJ3 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SMC4Q9NTJ3 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC20.77■□□□□ 0.92
SMC4Q9NTJ3 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
SMC4Q9NTJ3 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
SMC4Q9NTJ3 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC20.77■□□□□ 0.91
SMC4Q9NTJ3 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.91
SMC4Q9NTJ3 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
SMC4Q9NTJ3 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
SMC4Q9NTJ3 AC007950.2-201ENST00000615045 2347 ntBASIC20.76■□□□□ 0.91
SMC4Q9NTJ3 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
SMC4Q9NTJ3 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SMC4Q9NTJ3 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SMC4Q9NTJ3 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
SMC4Q9NTJ3 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
SMC4Q9NTJ3 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
SMC4Q9NTJ3 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC20.76■□□□□ 0.91
SMC4Q9NTJ3 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC20.76■□□□□ 0.91
SMC4Q9NTJ3 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SMC4Q9NTJ3 SPDYE14P-201ENST00000442619 822 ntBASIC20.76■□□□□ 0.91
SMC4Q9NTJ3 GATD1-206ENST00000526325 756 ntTSL 5 BASIC20.76■□□□□ 0.91
SMC4Q9NTJ3 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC20.76■□□□□ 0.91
SMC4Q9NTJ3 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC20.76■□□□□ 0.91
SMC4Q9NTJ3 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC20.76■□□□□ 0.91
SMC4Q9NTJ3 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SMC4Q9NTJ3 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SMC4Q9NTJ3 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SMC4Q9NTJ3 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
SMC4Q9NTJ3 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
SMC4Q9NTJ3 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SMC4Q9NTJ3 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
SMC4Q9NTJ3 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC20.75■□□□□ 0.91
SMC4Q9NTJ3 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC20.75■□□□□ 0.91
SMC4Q9NTJ3 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SMC4Q9NTJ3 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SMC4Q9NTJ3 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SMC4Q9NTJ3 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SMC4Q9NTJ3 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SMC4Q9NTJ3 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SMC4Q9NTJ3 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC20.75■□□□□ 0.91
SMC4Q9NTJ3 AC022188.1-201ENST00000620960 1664 ntBASIC20.75■□□□□ 0.91
SMC4Q9NTJ3 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC20.75■□□□□ 0.91
SMC4Q9NTJ3 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC20.75■□□□□ 0.91
SMC4Q9NTJ3 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC20.75■□□□□ 0.91
SMC4Q9NTJ3 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC20.75■□□□□ 0.91
SMC4Q9NTJ3 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SMC4Q9NTJ3 RAB34-224ENST00000636513 888 ntTSL 5 BASIC20.75■□□□□ 0.91
SMC4Q9NTJ3 PAUPAR-201ENST00000630360 2965 ntBASIC20.75■□□□□ 0.91
SMC4Q9NTJ3 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SMC4Q9NTJ3 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SMC4Q9NTJ3 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SMC4Q9NTJ3 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SMC4Q9NTJ3 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SMC4Q9NTJ3 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SMC4Q9NTJ3 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SMC4Q9NTJ3 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC20.74■□□□□ 0.91
SMC4Q9NTJ3 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SMC4Q9NTJ3 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SMC4Q9NTJ3 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SMC4Q9NTJ3 AC134407.2-201ENST00000625089 1978 ntBASIC20.74■□□□□ 0.91
SMC4Q9NTJ3 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
SMC4Q9NTJ3 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SMC4Q9NTJ3 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SMC4Q9NTJ3 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SMC4Q9NTJ3 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SMC4Q9NTJ3 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms