Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
TM9SF3Q9HD45 RBM39-205ENST00000397370 612 ntTSL 2 BASIC16.2■□□□□ 0.18
TM9SF3Q9HD45 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC16.2■□□□□ 0.18
TM9SF3Q9HD45 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TM9SF3Q9HD45 VMO1-203ENST00000416307 712 ntTSL 2 BASIC16.2■□□□□ 0.18
TM9SF3Q9HD45 PTPA-220ENST00000436883 532 ntTSL 4 BASIC16.2■□□□□ 0.18
TM9SF3Q9HD45 GNAQP1-201ENST00000444815 1067 ntBASIC16.2■□□□□ 0.18
TM9SF3Q9HD45 ZNF890P-202ENST00000530367 1156 ntBASIC16.2■□□□□ 0.18
TM9SF3Q9HD45 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TM9SF3Q9HD45 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC16.2■□□□□ 0.18
TM9SF3Q9HD45 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TM9SF3Q9HD45 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TM9SF3Q9HD45 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
TM9SF3Q9HD45 BTBD7P1-201ENST00000447253 1453 ntBASIC16.2■□□□□ 0.18
TM9SF3Q9HD45 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TM9SF3Q9HD45 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.2■□□□□ 0.18
TM9SF3Q9HD45 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TM9SF3Q9HD45 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
TM9SF3Q9HD45 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
TM9SF3Q9HD45 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TM9SF3Q9HD45 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
TM9SF3Q9HD45 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TM9SF3Q9HD45 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TM9SF3Q9HD45 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
TM9SF3Q9HD45 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
TM9SF3Q9HD45 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TM9SF3Q9HD45 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TM9SF3Q9HD45 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC16.19■□□□□ 0.18
TM9SF3Q9HD45 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TM9SF3Q9HD45 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
TM9SF3Q9HD45 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TM9SF3Q9HD45 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
TM9SF3Q9HD45 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TM9SF3Q9HD45 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TM9SF3Q9HD45 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TM9SF3Q9HD45 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
TM9SF3Q9HD45 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TM9SF3Q9HD45 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC16.19■□□□□ 0.18
TM9SF3Q9HD45 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TM9SF3Q9HD45 AC078925.2-201ENST00000624013 1973 ntBASIC16.19■□□□□ 0.18
TM9SF3Q9HD45 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TM9SF3Q9HD45 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
TM9SF3Q9HD45 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TM9SF3Q9HD45 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TM9SF3Q9HD45 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
TM9SF3Q9HD45 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TM9SF3Q9HD45 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC16.19■□□□□ 0.18
TM9SF3Q9HD45 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC16.19■□□□□ 0.18
TM9SF3Q9HD45 RN7SL618P-201ENST00000477850 296 ntBASIC16.19■□□□□ 0.18
TM9SF3Q9HD45 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC16.19■□□□□ 0.18
TM9SF3Q9HD45 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC16.19■□□□□ 0.18
TM9SF3Q9HD45 AC104794.3-201ENST00000566840 1248 ntBASIC16.19■□□□□ 0.18
TM9SF3Q9HD45 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC16.19■□□□□ 0.18
TM9SF3Q9HD45 AL139011.1-202ENST00000642063 584 ntBASIC16.19■□□□□ 0.18
TM9SF3Q9HD45 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
TM9SF3Q9HD45 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TM9SF3Q9HD45 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
TM9SF3Q9HD45 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
TM9SF3Q9HD45 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TM9SF3Q9HD45 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC16.19■□□□□ 0.18
TM9SF3Q9HD45 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
TM9SF3Q9HD45 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TM9SF3Q9HD45 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TM9SF3Q9HD45 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TM9SF3Q9HD45 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 AL391256.1-201ENST00000443260 1855 ntBASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 AC093724.1-201ENST00000448659 1027 ntBASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 NOP2-220ENST00000545915 630 ntTSL 2 BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 NAA38-207ENST00000576861 556 ntTSL 3 BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 AL359881.2-201ENST00000602973 570 ntBASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms