Protein–RNA interactions for Protein: Q9H611

PIF1, ATP-dependent DNA helicase PIF1, humanhuman

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PIF1Q9H611 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC15.56■□□□□ 0.08
PIF1Q9H611 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PIF1Q9H611 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC15.56■□□□□ 0.08
PIF1Q9H611 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC15.56■□□□□ 0.08
PIF1Q9H611 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
PIF1Q9H611 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PIF1Q9H611 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PIF1Q9H611 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
PIF1Q9H611 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC15.56■□□□□ 0.08
PIF1Q9H611 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PIF1Q9H611 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PIF1Q9H611 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PIF1Q9H611 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
PIF1Q9H611 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PIF1Q9H611 DFFB-203ENST00000341385 572 ntTSL 5 BASIC15.56■□□□□ 0.08
PIF1Q9H611 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PIF1Q9H611 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PIF1Q9H611 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC15.56■□□□□ 0.08
PIF1Q9H611 LSM5-204ENST00000409909 740 ntTSL 2 BASIC15.56■□□□□ 0.08
PIF1Q9H611 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC15.56■□□□□ 0.08
PIF1Q9H611 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC15.56■□□□□ 0.08
PIF1Q9H611 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
PIF1Q9H611 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC15.56■□□□□ 0.08
PIF1Q9H611 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC15.56■□□□□ 0.08
PIF1Q9H611 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
PIF1Q9H611 RNF151-202ENST00000569210 853 ntTSL 2 BASIC15.56■□□□□ 0.08
PIF1Q9H611 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PIF1Q9H611 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC15.56■□□□□ 0.08
PIF1Q9H611 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
PIF1Q9H611 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PIF1Q9H611 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PIF1Q9H611 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC15.56■□□□□ 0.08
PIF1Q9H611 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PIF1Q9H611 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PIF1Q9H611 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC15.56■□□□□ 0.08
PIF1Q9H611 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PIF1Q9H611 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC15.56■□□□□ 0.08
PIF1Q9H611 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PIF1Q9H611 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC15.56■□□□□ 0.08
PIF1Q9H611 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
PIF1Q9H611 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PIF1Q9H611 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PIF1Q9H611 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PIF1Q9H611 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PIF1Q9H611 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
PIF1Q9H611 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PIF1Q9H611 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PIF1Q9H611 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PIF1Q9H611 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PIF1Q9H611 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PIF1Q9H611 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PIF1Q9H611 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC15.55■□□□□ 0.08
PIF1Q9H611 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PIF1Q9H611 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
PIF1Q9H611 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
PIF1Q9H611 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PIF1Q9H611 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
PIF1Q9H611 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PIF1Q9H611 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC15.55■□□□□ 0.08
PIF1Q9H611 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
PIF1Q9H611 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PIF1Q9H611 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC15.55■□□□□ 0.08
PIF1Q9H611 AL353732.1-201ENST00000569618 1459 ntBASIC15.55■□□□□ 0.08
PIF1Q9H611 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC15.55■□□□□ 0.08
PIF1Q9H611 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
PIF1Q9H611 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
PIF1Q9H611 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC15.55■□□□□ 0.08
PIF1Q9H611 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PIF1Q9H611 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC15.55■□□□□ 0.08
PIF1Q9H611 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC15.55■□□□□ 0.08
PIF1Q9H611 SAPCD2P3-201ENST00000455031 850 ntBASIC15.55■□□□□ 0.08
PIF1Q9H611 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC15.55■□□□□ 0.08
PIF1Q9H611 AC107918.2-201ENST00000530817 355 ntBASIC15.55■□□□□ 0.08
PIF1Q9H611 TOLLIP-AS1-201ENST00000530897 939 ntBASIC15.55■□□□□ 0.08
PIF1Q9H611 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC15.55■□□□□ 0.08
PIF1Q9H611 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC15.55■□□□□ 0.08
PIF1Q9H611 AC087641.1-201ENST00000557561 1021 ntBASIC15.55■□□□□ 0.08
PIF1Q9H611 IRF8-202ENST00000562492 946 ntTSL 3 BASIC15.55■□□□□ 0.08
PIF1Q9H611 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC15.55■□□□□ 0.08
PIF1Q9H611 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC15.55■□□□□ 0.08
PIF1Q9H611 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC15.55■□□□□ 0.08
PIF1Q9H611 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC15.55■□□□□ 0.08
PIF1Q9H611 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
PIF1Q9H611 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC15.55■□□□□ 0.08
PIF1Q9H611 AL355877.3-201ENST00000622820 899 ntBASIC15.55■□□□□ 0.08
PIF1Q9H611 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC15.55■□□□□ 0.08
PIF1Q9H611 AF228730.7-201ENST00000641842 219 ntBASIC15.55■□□□□ 0.08
PIF1Q9H611 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PIF1Q9H611 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
PIF1Q9H611 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PIF1Q9H611 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
PIF1Q9H611 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PIF1Q9H611 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC15.55■□□□□ 0.08
PIF1Q9H611 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
PIF1Q9H611 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PIF1Q9H611 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
PIF1Q9H611 AC136621.1-201ENST00000624017 2304 ntBASIC15.55■□□□□ 0.08
PIF1Q9H611 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PIF1Q9H611 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC15.55■□□□□ 0.08
PIF1Q9H611 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC15.55■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 66.3 ms