Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
NKX3-1Q99801 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC14.21□□□□□ -0.13
NKX3-1Q99801 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
NKX3-1Q99801 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC14.21□□□□□ -0.13
NKX3-1Q99801 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
NKX3-1Q99801 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC14.21□□□□□ -0.13
NKX3-1Q99801 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
NKX3-1Q99801 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC14.21□□□□□ -0.13
NKX3-1Q99801 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
NKX3-1Q99801 CYP51A1P2-201ENST00000419457 1499 ntBASIC14.21□□□□□ -0.13
NKX3-1Q99801 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
NKX3-1Q99801 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
NKX3-1Q99801 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
NKX3-1Q99801 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
NKX3-1Q99801 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
NKX3-1Q99801 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
NKX3-1Q99801 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
NKX3-1Q99801 RPS2P1-201ENST00000434010 821 ntBASIC14.21□□□□□ -0.13
NKX3-1Q99801 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
NKX3-1Q99801 RPS15P9-201ENST00000494093 319 ntBASIC14.21□□□□□ -0.13
NKX3-1Q99801 AF238378.1-201ENST00000526806 358 ntBASIC14.21□□□□□ -0.13
NKX3-1Q99801 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC14.21□□□□□ -0.13
NKX3-1Q99801 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC14.21□□□□□ -0.13
NKX3-1Q99801 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
NKX3-1Q99801 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC14.21□□□□□ -0.13
NKX3-1Q99801 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC14.21□□□□□ -0.13
NKX3-1Q99801 AL805961.1-202ENST00000641562 540 ntBASIC14.21□□□□□ -0.13
NKX3-1Q99801 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC14.21□□□□□ -0.13
NKX3-1Q99801 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
NKX3-1Q99801 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
NKX3-1Q99801 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
NKX3-1Q99801 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
NKX3-1Q99801 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC14.21□□□□□ -0.13
NKX3-1Q99801 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
NKX3-1Q99801 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
NKX3-1Q99801 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
NKX3-1Q99801 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
NKX3-1Q99801 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
NKX3-1Q99801 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
NKX3-1Q99801 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
NKX3-1Q99801 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
NKX3-1Q99801 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
NKX3-1Q99801 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
NKX3-1Q99801 AC069224.1-201ENST00000566372 1715 ntBASIC14.21□□□□□ -0.14
NKX3-1Q99801 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC14.21□□□□□ -0.14
NKX3-1Q99801 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC14.21□□□□□ -0.14
NKX3-1Q99801 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
NKX3-1Q99801 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.14
NKX3-1Q99801 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
NKX3-1Q99801 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
NKX3-1Q99801 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC14.2□□□□□ -0.14
NKX3-1Q99801 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC14.2□□□□□ -0.14
NKX3-1Q99801 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
NKX3-1Q99801 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
NKX3-1Q99801 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
NKX3-1Q99801 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
NKX3-1Q99801 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
NKX3-1Q99801 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
NKX3-1Q99801 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
NKX3-1Q99801 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC14.2□□□□□ -0.14
NKX3-1Q99801 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
NKX3-1Q99801 AL353732.1-201ENST00000569618 1459 ntBASIC14.2□□□□□ -0.14
NKX3-1Q99801 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
NKX3-1Q99801 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC14.2□□□□□ -0.14
NKX3-1Q99801 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
NKX3-1Q99801 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
NKX3-1Q99801 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC14.2□□□□□ -0.14
NKX3-1Q99801 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
NKX3-1Q99801 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
NKX3-1Q99801 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
NKX3-1Q99801 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
NKX3-1Q99801 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
NKX3-1Q99801 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC14.2□□□□□ -0.14
NKX3-1Q99801 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC14.2□□□□□ -0.14
NKX3-1Q99801 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
NKX3-1Q99801 MOK-208ENST00000519058 917 ntTSL 2 BASIC14.2□□□□□ -0.14
NKX3-1Q99801 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC14.2□□□□□ -0.14
NKX3-1Q99801 AC087641.1-201ENST00000557561 1021 ntBASIC14.2□□□□□ -0.14
NKX3-1Q99801 PNMT-203ENST00000581428 677 ntTSL 2 BASIC14.2□□□□□ -0.14
NKX3-1Q99801 CALM3-211ENST00000598871 561 ntTSL 4 BASIC14.2□□□□□ -0.14
NKX3-1Q99801 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC14.2□□□□□ -0.14
NKX3-1Q99801 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
NKX3-1Q99801 AF228730.7-201ENST00000641842 219 ntBASIC14.2□□□□□ -0.14
NKX3-1Q99801 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
NKX3-1Q99801 AC007326.2-201ENST00000624224 7579 ntBASIC14.2□□□□□ -0.14
NKX3-1Q99801 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC14.2□□□□□ -0.14
NKX3-1Q99801 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
NKX3-1Q99801 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
NKX3-1Q99801 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
NKX3-1Q99801 AC005622.1-201ENST00000636801 1703 ntBASIC14.2□□□□□ -0.14
NKX3-1Q99801 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
NKX3-1Q99801 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC14.2□□□□□ -0.14
NKX3-1Q99801 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
NKX3-1Q99801 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
NKX3-1Q99801 CICP13-201ENST00000422015 2789 ntBASIC14.2□□□□□ -0.14
NKX3-1Q99801 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
NKX3-1Q99801 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
NKX3-1Q99801 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
NKX3-1Q99801 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC14.2□□□□□ -0.14
NKX3-1Q99801 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms