Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC18.52■□□□□ 0.56
USP28Q96RU2 AL590627.1-203ENST00000421194 1026 ntBASIC18.52■□□□□ 0.56
USP28Q96RU2 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC18.52■□□□□ 0.56
USP28Q96RU2 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC18.52■□□□□ 0.56
USP28Q96RU2 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC18.52■□□□□ 0.56
USP28Q96RU2 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
USP28Q96RU2 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC18.52■□□□□ 0.56
USP28Q96RU2 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
USP28Q96RU2 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
USP28Q96RU2 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
USP28Q96RU2 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC18.52■□□□□ 0.56
USP28Q96RU2 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC18.52■□□□□ 0.56
USP28Q96RU2 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC18.52■□□□□ 0.56
USP28Q96RU2 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC18.52■□□□□ 0.55
USP28Q96RU2 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
USP28Q96RU2 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
USP28Q96RU2 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
USP28Q96RU2 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC18.52■□□□□ 0.55
USP28Q96RU2 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC18.52■□□□□ 0.55
USP28Q96RU2 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.55
USP28Q96RU2 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC18.52■□□□□ 0.55
USP28Q96RU2 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC18.52■□□□□ 0.55
USP28Q96RU2 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC18.51■□□□□ 0.55
USP28Q96RU2 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
USP28Q96RU2 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
USP28Q96RU2 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC18.51■□□□□ 0.55
USP28Q96RU2 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
USP28Q96RU2 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC18.51■□□□□ 0.55
USP28Q96RU2 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
USP28Q96RU2 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
USP28Q96RU2 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC18.51■□□□□ 0.55
USP28Q96RU2 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
USP28Q96RU2 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
USP28Q96RU2 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC18.51■□□□□ 0.55
USP28Q96RU2 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC18.51■□□□□ 0.55
USP28Q96RU2 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC18.51■□□□□ 0.55
USP28Q96RU2 MDH2-205ENST00000461263 648 ntTSL 2 BASIC18.51■□□□□ 0.55
USP28Q96RU2 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC18.51■□□□□ 0.55
USP28Q96RU2 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC18.51■□□□□ 0.55
USP28Q96RU2 KLK8-205ENST00000593490 267 ntTSL 3 BASIC18.51■□□□□ 0.55
USP28Q96RU2 AC073389.1-201ENST00000595595 795 ntBASIC18.51■□□□□ 0.55
USP28Q96RU2 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC18.51■□□□□ 0.55
USP28Q96RU2 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC18.51■□□□□ 0.55
USP28Q96RU2 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
USP28Q96RU2 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
USP28Q96RU2 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
USP28Q96RU2 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
USP28Q96RU2 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
USP28Q96RU2 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC18.51■□□□□ 0.55
USP28Q96RU2 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
USP28Q96RU2 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
USP28Q96RU2 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
USP28Q96RU2 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
USP28Q96RU2 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
USP28Q96RU2 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USP28Q96RU2 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
USP28Q96RU2 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
USP28Q96RU2 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USP28Q96RU2 AC020658.6-201ENST00000623564 1870 ntBASIC18.5■□□□□ 0.55
USP28Q96RU2 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
USP28Q96RU2 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC18.5■□□□□ 0.55
USP28Q96RU2 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC18.5■□□□□ 0.55
USP28Q96RU2 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USP28Q96RU2 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC18.5■□□□□ 0.55
USP28Q96RU2 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC18.5■□□□□ 0.55
USP28Q96RU2 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
USP28Q96RU2 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
USP28Q96RU2 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
USP28Q96RU2 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USP28Q96RU2 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
USP28Q96RU2 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USP28Q96RU2 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USP28Q96RU2 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USP28Q96RU2 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
USP28Q96RU2 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
USP28Q96RU2 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
USP28Q96RU2 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
USP28Q96RU2 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
USP28Q96RU2 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC18.5■□□□□ 0.55
USP28Q96RU2 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC18.5■□□□□ 0.55
USP28Q96RU2 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC18.5■□□□□ 0.55
USP28Q96RU2 AC140113.2-201ENST00000604370 208 ntBASIC18.5■□□□□ 0.55
USP28Q96RU2 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
USP28Q96RU2 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
USP28Q96RU2 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
USP28Q96RU2 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
USP28Q96RU2 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC18.5■□□□□ 0.55
USP28Q96RU2 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
USP28Q96RU2 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USP28Q96RU2 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USP28Q96RU2 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
USP28Q96RU2 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
USP28Q96RU2 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USP28Q96RU2 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USP28Q96RU2 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
USP28Q96RU2 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
USP28Q96RU2 BSG-215ENST00000618006 1329 ntTSL 2 BASIC18.49■□□□□ 0.55
USP28Q96RU2 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
USP28Q96RU2 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
USP28Q96RU2 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms