Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PTCHD1Q96NR3 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
PTCHD1Q96NR3 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC15.3■□□□□ 0.04
PTCHD1Q96NR3 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTCHD1Q96NR3 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTCHD1Q96NR3 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PTCHD1Q96NR3 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTCHD1Q96NR3 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTCHD1Q96NR3 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC15.29■□□□□ 0.04
PTCHD1Q96NR3 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC15.29■□□□□ 0.04
PTCHD1Q96NR3 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PTCHD1Q96NR3 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTCHD1Q96NR3 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
PTCHD1Q96NR3 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC15.29■□□□□ 0.04
PTCHD1Q96NR3 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC15.29■□□□□ 0.04
PTCHD1Q96NR3 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTCHD1Q96NR3 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC15.29■□□□□ 0.04
PTCHD1Q96NR3 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTCHD1Q96NR3 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTCHD1Q96NR3 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
PTCHD1Q96NR3 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
PTCHD1Q96NR3 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC15.29■□□□□ 0.04
PTCHD1Q96NR3 AL353705.2-201ENST00000428243 662 ntBASIC15.29■□□□□ 0.04
PTCHD1Q96NR3 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
PTCHD1Q96NR3 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC15.29■□□□□ 0.04
PTCHD1Q96NR3 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC15.29■□□□□ 0.04
PTCHD1Q96NR3 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC15.29■□□□□ 0.04
PTCHD1Q96NR3 RPL28-205ENST00000558131 444 ntTSL 5 BASIC15.29■□□□□ 0.04
PTCHD1Q96NR3 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTCHD1Q96NR3 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC15.29■□□□□ 0.04
PTCHD1Q96NR3 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC15.29■□□□□ 0.04
PTCHD1Q96NR3 AL365330.1-201ENST00000607459 531 ntBASIC15.29■□□□□ 0.04
PTCHD1Q96NR3 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PTCHD1Q96NR3 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC15.29■□□□□ 0.04
PTCHD1Q96NR3 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC15.29■□□□□ 0.04
PTCHD1Q96NR3 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
PTCHD1Q96NR3 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PTCHD1Q96NR3 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC15.29■□□□□ 0.04
PTCHD1Q96NR3 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTCHD1Q96NR3 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTCHD1Q96NR3 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
PTCHD1Q96NR3 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PTCHD1Q96NR3 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
PTCHD1Q96NR3 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTCHD1Q96NR3 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTCHD1Q96NR3 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTCHD1Q96NR3 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTCHD1Q96NR3 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PTCHD1Q96NR3 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 AL592424.1-201ENST00000563624 1536 ntBASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 AC015911.4-201ENST00000588022 1070 ntBASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 AC093512.1-201ENST00000617969 520 ntBASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 LINC02199-201ENST00000506655 2702 ntBASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTCHD1Q96NR3 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PTCHD1Q96NR3 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
PTCHD1Q96NR3 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
PTCHD1Q96NR3 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC15.27■□□□□ 0.04
PTCHD1Q96NR3 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
PTCHD1Q96NR3 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms