Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 RAB5A-203ENST00000422242 1443 ntTSL 2 BASIC12.54□□□□□ -0.4
CCDC140Q96MF4 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC12.53□□□□□ -0.4
CCDC140Q96MF4 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
CCDC140Q96MF4 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CCDC140Q96MF4 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
CCDC140Q96MF4 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CCDC140Q96MF4 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CCDC140Q96MF4 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CCDC140Q96MF4 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CCDC140Q96MF4 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CCDC140Q96MF4 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
CCDC140Q96MF4 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
CCDC140Q96MF4 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
CCDC140Q96MF4 AP3S2-216ENST00000617003 1561 ntBASIC12.53□□□□□ -0.4
CCDC140Q96MF4 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CCDC140Q96MF4 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CCDC140Q96MF4 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC12.53□□□□□ -0.4
CCDC140Q96MF4 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CCDC140Q96MF4 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CCDC140Q96MF4 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CCDC140Q96MF4 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CCDC140Q96MF4 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC12.53□□□□□ -0.4
CCDC140Q96MF4 AP006288.1-201ENST00000446065 395 ntBASIC12.53□□□□□ -0.4
CCDC140Q96MF4 AC004967.1-201ENST00000453589 447 ntBASIC12.53□□□□□ -0.4
CCDC140Q96MF4 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC12.53□□□□□ -0.4
CCDC140Q96MF4 RARRES2P9-201ENST00000565168 469 ntBASIC12.53□□□□□ -0.4
CCDC140Q96MF4 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC12.53□□□□□ -0.4
CCDC140Q96MF4 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CCDC140Q96MF4 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC12.53□□□□□ -0.4
CCDC140Q96MF4 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC12.53□□□□□ -0.4
CCDC140Q96MF4 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC12.53□□□□□ -0.4
CCDC140Q96MF4 AC023511.2-201ENST00000618803 211 ntBASIC12.53□□□□□ -0.4
CCDC140Q96MF4 AC134684.3-201ENST00000641758 218 ntBASIC12.53□□□□□ -0.4
CCDC140Q96MF4 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CCDC140Q96MF4 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
CCDC140Q96MF4 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC12.53□□□□□ -0.4
CCDC140Q96MF4 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
CCDC140Q96MF4 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC12.53□□□□□ -0.4
CCDC140Q96MF4 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC12.53□□□□□ -0.4
CCDC140Q96MF4 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC12.53□□□□□ -0.4
CCDC140Q96MF4 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
CCDC140Q96MF4 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CCDC140Q96MF4 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC12.53□□□□□ -0.4
CCDC140Q96MF4 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CCDC140Q96MF4 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CCDC140Q96MF4 AP001282.1-201ENST00000531301 1499 ntBASIC12.53□□□□□ -0.4
CCDC140Q96MF4 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
CCDC140Q96MF4 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC12.52□□□□□ -0.4
CCDC140Q96MF4 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
CCDC140Q96MF4 AC134407.2-201ENST00000625089 1978 ntBASIC12.52□□□□□ -0.4
CCDC140Q96MF4 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC12.52□□□□□ -0.4
CCDC140Q96MF4 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC12.52□□□□□ -0.4
CCDC140Q96MF4 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC12.52□□□□□ -0.4
CCDC140Q96MF4 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC12.52□□□□□ -0.4
CCDC140Q96MF4 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC12.52□□□□□ -0.4
CCDC140Q96MF4 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
CCDC140Q96MF4 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
CCDC140Q96MF4 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC12.52□□□□□ -0.4
CCDC140Q96MF4 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
CCDC140Q96MF4 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.4
CCDC140Q96MF4 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC12.52□□□□□ -0.4
CCDC140Q96MF4 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC12.52□□□□□ -0.4
CCDC140Q96MF4 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC12.52□□□□□ -0.4
CCDC140Q96MF4 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC12.52□□□□□ -0.41
CCDC140Q96MF4 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CCDC140Q96MF4 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CCDC140Q96MF4 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
CCDC140Q96MF4 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CCDC140Q96MF4 CD81-202ENST00000381036 880 ntTSL 3 BASIC12.52□□□□□ -0.41
CCDC140Q96MF4 AC254562.1-201ENST00000417586 456 ntBASIC12.52□□□□□ -0.41
CCDC140Q96MF4 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC12.52□□□□□ -0.41
CCDC140Q96MF4 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC12.52□□□□□ -0.41
CCDC140Q96MF4 AC023141.5-201ENST00000458585 616 ntBASIC12.52□□□□□ -0.41
CCDC140Q96MF4 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC12.52□□□□□ -0.41
CCDC140Q96MF4 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC12.52□□□□□ -0.41
CCDC140Q96MF4 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC12.52□□□□□ -0.41
CCDC140Q96MF4 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC12.52□□□□□ -0.41
CCDC140Q96MF4 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC12.52□□□□□ -0.41
CCDC140Q96MF4 PAM16-215ENST00000577031 548 ntTSL 4 BASIC12.52□□□□□ -0.41
CCDC140Q96MF4 AC009093.7-201ENST00000623853 1223 ntBASIC12.52□□□□□ -0.41
CCDC140Q96MF4 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
CCDC140Q96MF4 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
CCDC140Q96MF4 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC12.52□□□□□ -0.41
CCDC140Q96MF4 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC12.52□□□□□ -0.41
CCDC140Q96MF4 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC12.52□□□□□ -0.41
CCDC140Q96MF4 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC12.52□□□□□ -0.41
CCDC140Q96MF4 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC12.52□□□□□ -0.41
CCDC140Q96MF4 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CCDC140Q96MF4 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CCDC140Q96MF4 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC12.52□□□□□ -0.41
CCDC140Q96MF4 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 64.8 ms