Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HDDC3Q8N4P3 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC16.21■□□□□ 0.19
HDDC3Q8N4P3 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC16.21■□□□□ 0.19
HDDC3Q8N4P3 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
HDDC3Q8N4P3 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC16.21■□□□□ 0.19
HDDC3Q8N4P3 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HDDC3Q8N4P3 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
HDDC3Q8N4P3 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HDDC3Q8N4P3 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HDDC3Q8N4P3 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HDDC3Q8N4P3 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
HDDC3Q8N4P3 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
HDDC3Q8N4P3 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HDDC3Q8N4P3 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
HDDC3Q8N4P3 MIR1909-201ENST00000411312 80 ntBASIC16.21■□□□□ 0.19
HDDC3Q8N4P3 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC16.21■□□□□ 0.19
HDDC3Q8N4P3 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HDDC3Q8N4P3 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
HDDC3Q8N4P3 ACA64.2-201ENST00000459014 129 ntBASIC16.21■□□□□ 0.19
HDDC3Q8N4P3 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HDDC3Q8N4P3 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
HDDC3Q8N4P3 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC16.21■□□□□ 0.19
HDDC3Q8N4P3 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC16.21■□□□□ 0.19
HDDC3Q8N4P3 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
HDDC3Q8N4P3 RAB35-202ENST00000534951 939 ntTSL 2 BASIC16.21■□□□□ 0.19
HDDC3Q8N4P3 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
HDDC3Q8N4P3 RAB43P1-201ENST00000561790 589 ntBASIC16.21■□□□□ 0.19
HDDC3Q8N4P3 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC16.21■□□□□ 0.19
HDDC3Q8N4P3 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
HDDC3Q8N4P3 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
HDDC3Q8N4P3 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC16.21■□□□□ 0.19
HDDC3Q8N4P3 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HDDC3Q8N4P3 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HDDC3Q8N4P3 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
HDDC3Q8N4P3 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16.21■□□□□ 0.19
HDDC3Q8N4P3 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC16.21■□□□□ 0.19
HDDC3Q8N4P3 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
HDDC3Q8N4P3 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
HDDC3Q8N4P3 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
HDDC3Q8N4P3 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
HDDC3Q8N4P3 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC16.21■□□□□ 0.18
HDDC3Q8N4P3 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC16.21■□□□□ 0.18
HDDC3Q8N4P3 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC16.21■□□□□ 0.18
HDDC3Q8N4P3 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
HDDC3Q8N4P3 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 SPDYE19P-201ENST00000338590 713 ntBASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 SDHAP3-202ENST00000515467 728 ntBASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 TEX48-202ENST00000612244 662 ntTSL 3 BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HDDC3Q8N4P3 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
HDDC3Q8N4P3 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC16.19■□□□□ 0.18
HDDC3Q8N4P3 AL136982.4-201ENST00000437689 1740 ntBASIC16.19■□□□□ 0.18
HDDC3Q8N4P3 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC16.19■□□□□ 0.18
HDDC3Q8N4P3 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HDDC3Q8N4P3 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HDDC3Q8N4P3 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms