Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC116Q8IYX3 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC15.32■□□□□ 0.04
CCDC116Q8IYX3 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC15.32■□□□□ 0.04
CCDC116Q8IYX3 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
CCDC116Q8IYX3 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC116Q8IYX3 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC116Q8IYX3 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC15.31■□□□□ 0.04
CCDC116Q8IYX3 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC15.31■□□□□ 0.04
CCDC116Q8IYX3 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC116Q8IYX3 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC116Q8IYX3 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC15.31■□□□□ 0.04
CCDC116Q8IYX3 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC15.31■□□□□ 0.04
CCDC116Q8IYX3 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC116Q8IYX3 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
CCDC116Q8IYX3 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC15.31■□□□□ 0.04
CCDC116Q8IYX3 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC15.31■□□□□ 0.04
CCDC116Q8IYX3 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC116Q8IYX3 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC15.31■□□□□ 0.04
CCDC116Q8IYX3 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC116Q8IYX3 MIR648-201ENST00000385046 94 ntBASIC15.31■□□□□ 0.04
CCDC116Q8IYX3 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC15.31■□□□□ 0.04
CCDC116Q8IYX3 ADH5P3-201ENST00000433842 1137 ntBASIC15.31■□□□□ 0.04
CCDC116Q8IYX3 MKNK2P1-201ENST00000437526 628 ntBASIC15.31■□□□□ 0.04
CCDC116Q8IYX3 TIMM8BP1-201ENST00000452384 211 ntBASIC15.31■□□□□ 0.04
CCDC116Q8IYX3 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC15.31■□□□□ 0.04
CCDC116Q8IYX3 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC15.31■□□□□ 0.04
CCDC116Q8IYX3 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC15.31■□□□□ 0.04
CCDC116Q8IYX3 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC15.31■□□□□ 0.04
CCDC116Q8IYX3 INO80E-210ENST00000567705 880 ntTSL 3 BASIC15.31■□□□□ 0.04
CCDC116Q8IYX3 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC15.31■□□□□ 0.04
CCDC116Q8IYX3 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC15.31■□□□□ 0.04
CCDC116Q8IYX3 AC006213.4-201ENST00000616184 634 ntBASIC15.31■□□□□ 0.04
CCDC116Q8IYX3 AC008267.7-201ENST00000624570 1194 ntBASIC15.31■□□□□ 0.04
CCDC116Q8IYX3 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC15.31■□□□□ 0.04
CCDC116Q8IYX3 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC116Q8IYX3 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
CCDC116Q8IYX3 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC15.31■□□□□ 0.04
CCDC116Q8IYX3 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC116Q8IYX3 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC116Q8IYX3 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC116Q8IYX3 CDC14C-201ENST00000428251 1719 ntBASIC15.31■□□□□ 0.04
CCDC116Q8IYX3 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
CCDC116Q8IYX3 AP003680.1-201ENST00000598970 3660 ntBASIC15.31■□□□□ 0.04
CCDC116Q8IYX3 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC15.31■□□□□ 0.04
CCDC116Q8IYX3 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC116Q8IYX3 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC116Q8IYX3 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC15.31■□□□□ 0.04
CCDC116Q8IYX3 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 CEND1P1-201ENST00000451006 455 ntBASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 RN7SL589P-201ENST00000481268 310 ntBASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 LINC02447-202ENST00000501888 2146 ntBASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 AC079140.1-201ENST00000508039 487 ntBASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 GATB-205ENST00000508611 605 ntTSL 2 BASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 AC105233.2-201ENST00000523697 349 ntBASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 AF228730.5-201ENST00000530288 346 ntBASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 AC005829.1-201ENST00000570002 483 ntBASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 AC073389.1-201ENST00000595595 795 ntBASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 GOLGA2P9-201ENST00000596977 1937 ntBASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 NKG7-205ENST00000600427 520 ntTSL 3 BASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 AL365330.1-201ENST00000607459 531 ntBASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 AC007950.2-201ENST00000615045 2347 ntBASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 SPTSSB-204ENST00000617024 1292 ntBASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC116Q8IYX3 HOTTIP_1.1-201ENST00000620415 57 ntBASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 73.4 ms