Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SYNE3Q6ZMZ3 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SYNE3Q6ZMZ3 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
SYNE3Q6ZMZ3 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC19.11■□□□□ 0.65
SYNE3Q6ZMZ3 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
SYNE3Q6ZMZ3 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SYNE3Q6ZMZ3 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SYNE3Q6ZMZ3 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC19.1■□□□□ 0.65
SYNE3Q6ZMZ3 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC19.1■□□□□ 0.65
SYNE3Q6ZMZ3 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC19.1■□□□□ 0.65
SYNE3Q6ZMZ3 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SYNE3Q6ZMZ3 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
SYNE3Q6ZMZ3 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SYNE3Q6ZMZ3 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC19.1■□□□□ 0.65
SYNE3Q6ZMZ3 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
SYNE3Q6ZMZ3 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC19.1■□□□□ 0.65
SYNE3Q6ZMZ3 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC19.1■□□□□ 0.65
SYNE3Q6ZMZ3 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
SYNE3Q6ZMZ3 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SYNE3Q6ZMZ3 STOM-202ENST00000347359 870 ntTSL 2 BASIC19.1■□□□□ 0.65
SYNE3Q6ZMZ3 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SYNE3Q6ZMZ3 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SYNE3Q6ZMZ3 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
SYNE3Q6ZMZ3 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SYNE3Q6ZMZ3 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC19.1■□□□□ 0.65
SYNE3Q6ZMZ3 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SYNE3Q6ZMZ3 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SYNE3Q6ZMZ3 AC004461.1-201ENST00000412461 403 ntBASIC19.1■□□□□ 0.65
SYNE3Q6ZMZ3 AC069335.1-201ENST00000489972 472 ntBASIC19.1■□□□□ 0.65
SYNE3Q6ZMZ3 TSFM-210ENST00000550559 897 ntTSL 5 BASIC19.1■□□□□ 0.65
SYNE3Q6ZMZ3 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC19.1■□□□□ 0.65
SYNE3Q6ZMZ3 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC19.1■□□□□ 0.65
SYNE3Q6ZMZ3 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
SYNE3Q6ZMZ3 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SYNE3Q6ZMZ3 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC19.1■□□□□ 0.65
SYNE3Q6ZMZ3 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC19.1■□□□□ 0.65
SYNE3Q6ZMZ3 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SYNE3Q6ZMZ3 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SYNE3Q6ZMZ3 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
SYNE3Q6ZMZ3 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SYNE3Q6ZMZ3 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC19.1■□□□□ 0.65
SYNE3Q6ZMZ3 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SYNE3Q6ZMZ3 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC19.1■□□□□ 0.65
SYNE3Q6ZMZ3 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
SYNE3Q6ZMZ3 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
SYNE3Q6ZMZ3 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC19.1■□□□□ 0.65
SYNE3Q6ZMZ3 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC19.1■□□□□ 0.65
SYNE3Q6ZMZ3 AGK-211ENST00000629555 2765 ntTSL 5 BASIC19.1■□□□□ 0.65
SYNE3Q6ZMZ3 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SYNE3Q6ZMZ3 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
SYNE3Q6ZMZ3 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SYNE3Q6ZMZ3 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC19.09■□□□□ 0.65
SYNE3Q6ZMZ3 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SYNE3Q6ZMZ3 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
SYNE3Q6ZMZ3 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SYNE3Q6ZMZ3 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SYNE3Q6ZMZ3 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC19.09■□□□□ 0.65
SYNE3Q6ZMZ3 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC19.09■□□□□ 0.65
SYNE3Q6ZMZ3 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SYNE3Q6ZMZ3 AC254562.1-201ENST00000417586 456 ntBASIC19.09■□□□□ 0.65
SYNE3Q6ZMZ3 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC19.09■□□□□ 0.65
SYNE3Q6ZMZ3 AC142381.1-201ENST00000426099 345 ntBASIC19.09■□□□□ 0.65
SYNE3Q6ZMZ3 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SYNE3Q6ZMZ3 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC19.09■□□□□ 0.65
SYNE3Q6ZMZ3 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC19.09■□□□□ 0.65
SYNE3Q6ZMZ3 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC19.09■□□□□ 0.65
SYNE3Q6ZMZ3 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SYNE3Q6ZMZ3 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC19.09■□□□□ 0.65
SYNE3Q6ZMZ3 SNHG9-202ENST00000564014 471 ntBASIC19.09■□□□□ 0.65
SYNE3Q6ZMZ3 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SYNE3Q6ZMZ3 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC19.09■□□□□ 0.65
SYNE3Q6ZMZ3 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC19.09■□□□□ 0.65
SYNE3Q6ZMZ3 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SYNE3Q6ZMZ3 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC19.09■□□□□ 0.65
SYNE3Q6ZMZ3 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC19.09■□□□□ 0.65
SYNE3Q6ZMZ3 AC134684.3-201ENST00000641758 218 ntBASIC19.09■□□□□ 0.65
SYNE3Q6ZMZ3 AC079781.4-201ENST00000641908 219 ntBASIC19.09■□□□□ 0.65
SYNE3Q6ZMZ3 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC19.09■□□□□ 0.65
SYNE3Q6ZMZ3 GOLGA2P9-201ENST00000596977 1937 ntBASIC19.09■□□□□ 0.65
SYNE3Q6ZMZ3 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
SYNE3Q6ZMZ3 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
SYNE3Q6ZMZ3 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
SYNE3Q6ZMZ3 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC19.09■□□□□ 0.65
SYNE3Q6ZMZ3 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
SYNE3Q6ZMZ3 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SYNE3Q6ZMZ3 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC19.09■□□□□ 0.65
SYNE3Q6ZMZ3 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SYNE3Q6ZMZ3 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SYNE3Q6ZMZ3 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC19.08■□□□□ 0.65
SYNE3Q6ZMZ3 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SYNE3Q6ZMZ3 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
SYNE3Q6ZMZ3 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SYNE3Q6ZMZ3 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC19.08■□□□□ 0.65
SYNE3Q6ZMZ3 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.65
SYNE3Q6ZMZ3 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SYNE3Q6ZMZ3 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC19.08■□□□□ 0.65
SYNE3Q6ZMZ3 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.65
SYNE3Q6ZMZ3 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SYNE3Q6ZMZ3 AC004967.1-201ENST00000453589 447 ntBASIC19.08■□□□□ 0.64
SYNE3Q6ZMZ3 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 58.7 ms