Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RC3H1Q5TC82 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
RC3H1Q5TC82 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RC3H1Q5TC82 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RC3H1Q5TC82 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
RC3H1Q5TC82 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RC3H1Q5TC82 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RC3H1Q5TC82 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
RC3H1Q5TC82 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC20.08■□□□□ 0.81
RC3H1Q5TC82 AL607033.1-201ENST00000623900 1599 ntBASIC20.08■□□□□ 0.81
RC3H1Q5TC82 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
RC3H1Q5TC82 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC20.08■□□□□ 0.81
RC3H1Q5TC82 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
RC3H1Q5TC82 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC20.08■□□□□ 0.81
RC3H1Q5TC82 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC20.08■□□□□ 0.81
RC3H1Q5TC82 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
RC3H1Q5TC82 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
RC3H1Q5TC82 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
RC3H1Q5TC82 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
RC3H1Q5TC82 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
RC3H1Q5TC82 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
RC3H1Q5TC82 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
RC3H1Q5TC82 AC092506.1-202ENST00000401022 528 ntBASIC20.08■□□□□ 0.81
RC3H1Q5TC82 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC20.08■□□□□ 0.81
RC3H1Q5TC82 CALR4P-201ENST00000431943 946 ntBASIC20.08■□□□□ 0.81
RC3H1Q5TC82 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC20.08■□□□□ 0.81
RC3H1Q5TC82 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC20.08■□□□□ 0.81
RC3H1Q5TC82 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
RC3H1Q5TC82 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC20.08■□□□□ 0.81
RC3H1Q5TC82 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC20.08■□□□□ 0.81
RC3H1Q5TC82 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC20.08■□□□□ 0.81
RC3H1Q5TC82 AL022328.3-201ENST00000607943 679 ntBASIC20.08■□□□□ 0.81
RC3H1Q5TC82 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
RC3H1Q5TC82 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC20.08■□□□□ 0.8
RC3H1Q5TC82 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
RC3H1Q5TC82 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.8
RC3H1Q5TC82 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
RC3H1Q5TC82 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC20.08■□□□□ 0.8
RC3H1Q5TC82 AC078925.2-201ENST00000624013 1973 ntBASIC20.08■□□□□ 0.8
RC3H1Q5TC82 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC20.08■□□□□ 0.8
RC3H1Q5TC82 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
RC3H1Q5TC82 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RC3H1Q5TC82 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
RC3H1Q5TC82 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RC3H1Q5TC82 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
RC3H1Q5TC82 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC20.07■□□□□ 0.8
RC3H1Q5TC82 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RC3H1Q5TC82 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC20.07■□□□□ 0.8
RC3H1Q5TC82 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RC3H1Q5TC82 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RC3H1Q5TC82 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
RC3H1Q5TC82 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RC3H1Q5TC82 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RC3H1Q5TC82 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
RC3H1Q5TC82 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC20.07■□□□□ 0.8
RC3H1Q5TC82 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
RC3H1Q5TC82 PFN2-215ENST00000497148 743 ntTSL 4 BASIC20.07■□□□□ 0.8
RC3H1Q5TC82 AP001258.2-201ENST00000529891 490 ntBASIC20.07■□□□□ 0.8
RC3H1Q5TC82 RHOQP1-201ENST00000555758 579 ntBASIC20.07■□□□□ 0.8
RC3H1Q5TC82 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC20.07■□□□□ 0.8
RC3H1Q5TC82 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC20.07■□□□□ 0.8
RC3H1Q5TC82 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC20.07■□□□□ 0.8
RC3H1Q5TC82 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC20.07■□□□□ 0.8
RC3H1Q5TC82 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RC3H1Q5TC82 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC20.07■□□□□ 0.8
RC3H1Q5TC82 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC20.06■□□□□ 0.8
RC3H1Q5TC82 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
RC3H1Q5TC82 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
RC3H1Q5TC82 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RC3H1Q5TC82 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RC3H1Q5TC82 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RC3H1Q5TC82 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
RC3H1Q5TC82 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
RC3H1Q5TC82 PGGT1BP2-201ENST00000398621 1028 ntBASIC20.06■□□□□ 0.8
RC3H1Q5TC82 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
RC3H1Q5TC82 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC20.06■□□□□ 0.8
RC3H1Q5TC82 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC20.06■□□□□ 0.8
RC3H1Q5TC82 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC20.06■□□□□ 0.8
RC3H1Q5TC82 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
RC3H1Q5TC82 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC20.06■□□□□ 0.8
RC3H1Q5TC82 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
RC3H1Q5TC82 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC20.06■□□□□ 0.8
RC3H1Q5TC82 ABBA01031663.1-201ENST00000635630 790 ntBASIC20.06■□□□□ 0.8
RC3H1Q5TC82 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC20.06■□□□□ 0.8
RC3H1Q5TC82 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RC3H1Q5TC82 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC20.06■□□□□ 0.8
RC3H1Q5TC82 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC20.06■□□□□ 0.8
RC3H1Q5TC82 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC20.06■□□□□ 0.8
RC3H1Q5TC82 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
RC3H1Q5TC82 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC20.05■□□□□ 0.8
RC3H1Q5TC82 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RC3H1Q5TC82 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RC3H1Q5TC82 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC20.05■□□□□ 0.8
RC3H1Q5TC82 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
RC3H1Q5TC82 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
RC3H1Q5TC82 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RC3H1Q5TC82 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RC3H1Q5TC82 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RC3H1Q5TC82 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RC3H1Q5TC82 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms