Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC16.8■□□□□ 0.28
CHD9Q3L8U1 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC16.79■□□□□ 0.28
CHD9Q3L8U1 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC16.79■□□□□ 0.28
CHD9Q3L8U1 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
CHD9Q3L8U1 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CHD9Q3L8U1 DEF8-202ENST00000418391 852 ntTSL 2 BASIC16.79■□□□□ 0.28
CHD9Q3L8U1 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC16.79■□□□□ 0.28
CHD9Q3L8U1 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CHD9Q3L8U1 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC16.79■□□□□ 0.28
CHD9Q3L8U1 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHD9Q3L8U1 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC16.79■□□□□ 0.28
CHD9Q3L8U1 AC015910.1-201ENST00000579400 975 ntBASIC16.79■□□□□ 0.28
CHD9Q3L8U1 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC16.79■□□□□ 0.28
CHD9Q3L8U1 ECM1P1-201ENST00000604092 1279 ntBASIC16.79■□□□□ 0.28
CHD9Q3L8U1 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHD9Q3L8U1 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
CHD9Q3L8U1 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
CHD9Q3L8U1 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHD9Q3L8U1 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CHD9Q3L8U1 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHD9Q3L8U1 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHD9Q3L8U1 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHD9Q3L8U1 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC16.79■□□□□ 0.28
CHD9Q3L8U1 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC16.79■□□□□ 0.28
CHD9Q3L8U1 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
CHD9Q3L8U1 CYP46A4P-201ENST00000414953 267 ntBASIC16.79■□□□□ 0.28
CHD9Q3L8U1 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC16.79■□□□□ 0.28
CHD9Q3L8U1 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC16.79■□□□□ 0.28
CHD9Q3L8U1 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC16.79■□□□□ 0.28
CHD9Q3L8U1 AC245100.5-201ENST00000452108 331 ntBASIC16.79■□□□□ 0.28
CHD9Q3L8U1 PTK2-225ENST00000520892 571 ntTSL 4 BASIC16.79■□□□□ 0.28
CHD9Q3L8U1 FGFR3P5-201ENST00000564496 886 ntBASIC16.79■□□□□ 0.28
CHD9Q3L8U1 KSR1-207ENST00000578981 748 ntTSL 4 BASIC16.79■□□□□ 0.28
CHD9Q3L8U1 MIR3907-201ENST00000579424 151 ntBASIC16.79■□□□□ 0.28
CHD9Q3L8U1 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
CHD9Q3L8U1 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CHD9Q3L8U1 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC16.79■□□□□ 0.28
CHD9Q3L8U1 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHD9Q3L8U1 AL691432.1-201ENST00000596308 1422 ntBASIC16.79■□□□□ 0.28
CHD9Q3L8U1 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHD9Q3L8U1 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHD9Q3L8U1 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC16.79■□□□□ 0.28
CHD9Q3L8U1 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CHD9Q3L8U1 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHD9Q3L8U1 HLA-DQB2-229ENST00000411527 1059 ntBASIC16.79■□□□□ 0.28
CHD9Q3L8U1 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC16.79■□□□□ 0.28
CHD9Q3L8U1 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
CHD9Q3L8U1 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC16.79■□□□□ 0.28
CHD9Q3L8U1 ACR-203ENST00000529621 708 ntTSL 5 BASIC16.79■□□□□ 0.28
CHD9Q3L8U1 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC16.79■□□□□ 0.28
CHD9Q3L8U1 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC16.79■□□□□ 0.28
CHD9Q3L8U1 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC16.79■□□□□ 0.28
CHD9Q3L8U1 AC138649.2-201ENST00000615886 705 ntBASIC16.79■□□□□ 0.28
CHD9Q3L8U1 AC244452.3-201ENST00000636814 210 ntBASIC16.79■□□□□ 0.28
CHD9Q3L8U1 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHD9Q3L8U1 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
CHD9Q3L8U1 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHD9Q3L8U1 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CHD9Q3L8U1 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHD9Q3L8U1 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHD9Q3L8U1 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHD9Q3L8U1 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC16.78■□□□□ 0.28
CHD9Q3L8U1 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC16.78■□□□□ 0.28
CHD9Q3L8U1 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CHD9Q3L8U1 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
CHD9Q3L8U1 HSPB1P2-201ENST00000448722 546 ntBASIC16.78■□□□□ 0.28
CHD9Q3L8U1 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC16.78■□□□□ 0.28
CHD9Q3L8U1 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHD9Q3L8U1 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC16.78■□□□□ 0.28
CHD9Q3L8U1 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC16.78■□□□□ 0.28
CHD9Q3L8U1 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC16.78■□□□□ 0.28
CHD9Q3L8U1 NKG7-204ENST00000595217 816 ntTSL 2 BASIC16.78■□□□□ 0.28
CHD9Q3L8U1 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC16.78■□□□□ 0.28
CHD9Q3L8U1 CDK7-214ENST00000626796 358 ntTSL 5 BASIC16.78■□□□□ 0.28
CHD9Q3L8U1 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC16.78■□□□□ 0.28
CHD9Q3L8U1 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHD9Q3L8U1 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CHD9Q3L8U1 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC16.78■□□□□ 0.28
CHD9Q3L8U1 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
CHD9Q3L8U1 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC16.78■□□□□ 0.28
CHD9Q3L8U1 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.78■□□□□ 0.28
CHD9Q3L8U1 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CHD9Q3L8U1 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
CHD9Q3L8U1 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CHD9Q3L8U1 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
CHD9Q3L8U1 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC16.78■□□□□ 0.28
CHD9Q3L8U1 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHD9Q3L8U1 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHD9Q3L8U1 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC16.78■□□□□ 0.28
CHD9Q3L8U1 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC16.78■□□□□ 0.28
CHD9Q3L8U1 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHD9Q3L8U1 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHD9Q3L8U1 HLA-A-202ENST00000376806 1854 ntBASIC16.78■□□□□ 0.28
CHD9Q3L8U1 GATB-213ENST00000515812 1893 ntTSL 5 BASIC16.78■□□□□ 0.28
CHD9Q3L8U1 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CHD9Q3L8U1 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
CHD9Q3L8U1 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
CHD9Q3L8U1 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CHD9Q3L8U1 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CHD9Q3L8U1 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms