Protein–RNA interactions for Protein: P57078

RIPK4, Receptor-interacting serine/threonine-protein kinase 4, humanhuman

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK4P57078 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC21.14■□□□□ 0.97
RIPK4P57078 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
RIPK4P57078 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
RIPK4P57078 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC21.14■□□□□ 0.97
RIPK4P57078 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC21.14■□□□□ 0.97
RIPK4P57078 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
RIPK4P57078 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
RIPK4P57078 LTF-203ENST00000426532 2494 ntTSL 2 BASIC21.14■□□□□ 0.97
RIPK4P57078 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC21.14■□□□□ 0.97
RIPK4P57078 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
RIPK4P57078 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
RIPK4P57078 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
RIPK4P57078 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
RIPK4P57078 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC21.13■□□□□ 0.97
RIPK4P57078 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC21.13■□□□□ 0.97
RIPK4P57078 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
RIPK4P57078 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RIPK4P57078 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RIPK4P57078 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
RIPK4P57078 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
RIPK4P57078 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RIPK4P57078 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RIPK4P57078 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
RIPK4P57078 AC087499.5-201ENST00000452760 1342 ntBASIC21.13■□□□□ 0.97
RIPK4P57078 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC21.13■□□□□ 0.97
RIPK4P57078 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
RIPK4P57078 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
RIPK4P57078 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RIPK4P57078 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RIPK4P57078 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
RIPK4P57078 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC21.13■□□□□ 0.97
RIPK4P57078 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC21.13■□□□□ 0.97
RIPK4P57078 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
RIPK4P57078 INGX-202ENST00000489074 768 ntBASIC21.13■□□□□ 0.97
RIPK4P57078 AC243562.2-201ENST00000561247 970 ntBASIC21.13■□□□□ 0.97
RIPK4P57078 NAA60-208ENST00000570819 833 ntTSL 2 BASIC21.13■□□□□ 0.97
RIPK4P57078 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC21.13■□□□□ 0.97
RIPK4P57078 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC21.13■□□□□ 0.97
RIPK4P57078 AL844908.2-201ENST00000609461 460 ntBASIC21.13■□□□□ 0.97
RIPK4P57078 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RIPK4P57078 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RIPK4P57078 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
RIPK4P57078 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RIPK4P57078 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC21.13■□□□□ 0.97
RIPK4P57078 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
RIPK4P57078 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC21.13■□□□□ 0.97
RIPK4P57078 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
RIPK4P57078 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RIPK4P57078 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
RIPK4P57078 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
RIPK4P57078 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC21.13■□□□□ 0.97
RIPK4P57078 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
RIPK4P57078 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
RIPK4P57078 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RIPK4P57078 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RIPK4P57078 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RIPK4P57078 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
RIPK4P57078 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC21.12■□□□□ 0.97
RIPK4P57078 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC21.12■□□□□ 0.97
RIPK4P57078 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC21.12■□□□□ 0.97
RIPK4P57078 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RIPK4P57078 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
RIPK4P57078 MIR648-201ENST00000385046 94 ntBASIC21.12■□□□□ 0.97
RIPK4P57078 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC21.12■□□□□ 0.97
RIPK4P57078 CENPM-206ENST00000407253 818 ntTSL 2 BASIC21.12■□□□□ 0.97
RIPK4P57078 MRPS18AP1-201ENST00000414458 589 ntBASIC21.12■□□□□ 0.97
RIPK4P57078 AL512638.1-201ENST00000457493 794 ntBASIC21.12■□□□□ 0.97
RIPK4P57078 AL512361.1-201ENST00000554200 418 ntBASIC21.12■□□□□ 0.97
RIPK4P57078 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC21.12■□□□□ 0.97
RIPK4P57078 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC21.12■□□□□ 0.97
RIPK4P57078 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RIPK4P57078 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC21.12■□□□□ 0.97
RIPK4P57078 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RIPK4P57078 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
RIPK4P57078 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RIPK4P57078 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
RIPK4P57078 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RIPK4P57078 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC21.11■□□□□ 0.97
RIPK4P57078 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RIPK4P57078 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RIPK4P57078 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
RIPK4P57078 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
RIPK4P57078 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RIPK4P57078 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
RIPK4P57078 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RIPK4P57078 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RIPK4P57078 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RIPK4P57078 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC21.11■□□□□ 0.97
RIPK4P57078 WDR53-203ENST00000429115 683 ntTSL 2 BASIC21.11■□□□□ 0.97
RIPK4P57078 HIST3H2BA-201ENST00000436555 524 ntBASIC21.11■□□□□ 0.97
RIPK4P57078 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC21.11■□□□□ 0.97
RIPK4P57078 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC21.11■□□□□ 0.97
RIPK4P57078 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RIPK4P57078 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RIPK4P57078 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
RIPK4P57078 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RIPK4P57078 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RIPK4P57078 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RIPK4P57078 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RIPK4P57078 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms