Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC18.54■□□□□ 0.56
HMGCS2P54868 NME4-207ENST00000450036 985 ntTSL 3 BASIC18.54■□□□□ 0.56
HMGCS2P54868 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC18.54■□□□□ 0.56
HMGCS2P54868 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
HMGCS2P54868 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC18.54■□□□□ 0.56
HMGCS2P54868 FAM86LP-201ENST00000478302 853 ntBASIC18.54■□□□□ 0.56
HMGCS2P54868 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
HMGCS2P54868 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
HMGCS2P54868 AL359711.2-201ENST00000563105 872 ntBASIC18.54■□□□□ 0.56
HMGCS2P54868 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC18.54■□□□□ 0.56
HMGCS2P54868 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC18.54■□□□□ 0.56
HMGCS2P54868 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
HMGCS2P54868 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HMGCS2P54868 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HMGCS2P54868 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC18.54■□□□□ 0.56
HMGCS2P54868 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HMGCS2P54868 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HMGCS2P54868 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
HMGCS2P54868 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
HMGCS2P54868 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HMGCS2P54868 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HMGCS2P54868 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
HMGCS2P54868 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC18.54■□□□□ 0.56
HMGCS2P54868 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HMGCS2P54868 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
HMGCS2P54868 AMT-232ENST00000636199 1546 ntTSL 5 BASIC18.54■□□□□ 0.56
HMGCS2P54868 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGCS2P54868 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
HMGCS2P54868 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGCS2P54868 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC18.53■□□□□ 0.56
HMGCS2P54868 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGCS2P54868 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
HMGCS2P54868 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGCS2P54868 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC18.53■□□□□ 0.56
HMGCS2P54868 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC18.53■□□□□ 0.56
HMGCS2P54868 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC18.53■□□□□ 0.56
HMGCS2P54868 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGCS2P54868 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGCS2P54868 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGCS2P54868 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGCS2P54868 RPF1-202ENST00000370656 724 ntTSL 2 BASIC18.53■□□□□ 0.56
HMGCS2P54868 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
HMGCS2P54868 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGCS2P54868 PKIG-203ENST00000372887 769 ntTSL 3 BASIC18.53■□□□□ 0.56
HMGCS2P54868 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC18.53■□□□□ 0.56
HMGCS2P54868 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
HMGCS2P54868 KRT18P64-201ENST00000434946 1219 ntBASIC18.53■□□□□ 0.56
HMGCS2P54868 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC18.53■□□□□ 0.56
HMGCS2P54868 CTBP2P5-201ENST00000454986 1264 ntBASIC18.53■□□□□ 0.56
HMGCS2P54868 TDH-203ENST00000531764 1110 ntBASIC18.53■□□□□ 0.56
HMGCS2P54868 BRI3BPP1-201ENST00000594224 787 ntBASIC18.53■□□□□ 0.56
HMGCS2P54868 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC18.53■□□□□ 0.56
HMGCS2P54868 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
HMGCS2P54868 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC18.53■□□□□ 0.56
HMGCS2P54868 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGCS2P54868 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGCS2P54868 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC18.53■□□□□ 0.56
HMGCS2P54868 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGCS2P54868 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
HMGCS2P54868 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HMGCS2P54868 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC18.52■□□□□ 0.56
HMGCS2P54868 REXO1L8P-201ENST00000604378 1897 ntBASIC18.52■□□□□ 0.56
HMGCS2P54868 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC18.52■□□□□ 0.56
HMGCS2P54868 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
HMGCS2P54868 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
HMGCS2P54868 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HMGCS2P54868 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HMGCS2P54868 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC18.52■□□□□ 0.56
HMGCS2P54868 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
HMGCS2P54868 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
HMGCS2P54868 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC18.52■□□□□ 0.56
HMGCS2P54868 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC18.52■□□□□ 0.56
HMGCS2P54868 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC18.52■□□□□ 0.56
HMGCS2P54868 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC18.52■□□□□ 0.56
HMGCS2P54868 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC18.52■□□□□ 0.56
HMGCS2P54868 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC18.52■□□□□ 0.56
HMGCS2P54868 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC18.52■□□□□ 0.56
HMGCS2P54868 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC18.52■□□□□ 0.56
HMGCS2P54868 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
HMGCS2P54868 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC18.52■□□□□ 0.56
HMGCS2P54868 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC18.52■□□□□ 0.56
HMGCS2P54868 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC18.52■□□□□ 0.55
HMGCS2P54868 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
HMGCS2P54868 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
HMGCS2P54868 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
HMGCS2P54868 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
HMGCS2P54868 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
HMGCS2P54868 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.55
HMGCS2P54868 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
HMGCS2P54868 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
HMGCS2P54868 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGCS2P54868 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC18.51■□□□□ 0.55
HMGCS2P54868 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGCS2P54868 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HMGCS2P54868 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HMGCS2P54868 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGCS2P54868 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGCS2P54868 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGCS2P54868 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGCS2P54868 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 73.8 ms