Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 METTL21AP1-201ENST00000438852 635 ntBASIC18.98■□□□□ 0.63
MRE11P49959 DNAJB3-202ENST00000449667 1266 ntBASIC18.98■□□□□ 0.63
MRE11P49959 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC18.98■□□□□ 0.63
MRE11P49959 PUDP-206ENST00000540122 825 ntTSL 2 BASIC18.98■□□□□ 0.63
MRE11P49959 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
MRE11P49959 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC18.98■□□□□ 0.63
MRE11P49959 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
MRE11P49959 AC139887.3-201ENST00000568585 713 ntBASIC18.98■□□□□ 0.63
MRE11P49959 NAA38-203ENST00000575071 553 ntTSL 2 BASIC18.98■□□□□ 0.63
MRE11P49959 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC18.98■□□□□ 0.63
MRE11P49959 AC013467.2-201ENST00000605472 835 ntBASIC18.98■□□□□ 0.63
MRE11P49959 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC18.98■□□□□ 0.63
MRE11P49959 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC18.98■□□□□ 0.63
MRE11P49959 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC18.98■□□□□ 0.63
MRE11P49959 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
MRE11P49959 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
MRE11P49959 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC18.98■□□□□ 0.63
MRE11P49959 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
MRE11P49959 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
MRE11P49959 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC18.98■□□□□ 0.63
MRE11P49959 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC18.98■□□□□ 0.63
MRE11P49959 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC18.98■□□□□ 0.63
MRE11P49959 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC18.98■□□□□ 0.63
MRE11P49959 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
MRE11P49959 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
MRE11P49959 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
MRE11P49959 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
MRE11P49959 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
MRE11P49959 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
MRE11P49959 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
MRE11P49959 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
MRE11P49959 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
MRE11P49959 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC18.97■□□□□ 0.63
MRE11P49959 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
MRE11P49959 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC18.97■□□□□ 0.63
MRE11P49959 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
MRE11P49959 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
MRE11P49959 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
MRE11P49959 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
MRE11P49959 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
MRE11P49959 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
MRE11P49959 NFIC-211ENST00000641145 8399 ntBASIC18.97■□□□□ 0.63
MRE11P49959 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
MRE11P49959 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC18.97■□□□□ 0.63
MRE11P49959 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
MRE11P49959 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
MRE11P49959 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
MRE11P49959 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC18.97■□□□□ 0.63
MRE11P49959 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
MRE11P49959 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
MRE11P49959 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
MRE11P49959 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
MRE11P49959 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
MRE11P49959 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC18.97■□□□□ 0.63
MRE11P49959 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
MRE11P49959 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
MRE11P49959 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
MRE11P49959 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
MRE11P49959 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
MRE11P49959 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
MRE11P49959 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
MRE11P49959 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
MRE11P49959 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
MRE11P49959 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
MRE11P49959 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC18.96■□□□□ 0.63
MRE11P49959 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC18.96■□□□□ 0.63
MRE11P49959 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
MRE11P49959 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
MRE11P49959 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
MRE11P49959 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
MRE11P49959 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
MRE11P49959 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC18.96■□□□□ 0.63
MRE11P49959 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC18.96■□□□□ 0.63
MRE11P49959 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
MRE11P49959 DNAJB3-201ENST00000446806 729 ntBASIC18.96■□□□□ 0.63
MRE11P49959 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC18.96■□□□□ 0.63
MRE11P49959 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC18.96■□□□□ 0.63
MRE11P49959 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC18.96■□□□□ 0.63
MRE11P49959 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC18.96■□□□□ 0.63
MRE11P49959 LITAF-211ENST00000572255 516 ntTSL 4 BASIC18.96■□□□□ 0.63
MRE11P49959 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC18.96■□□□□ 0.63
MRE11P49959 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
MRE11P49959 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC18.96■□□□□ 0.63
MRE11P49959 STK25P1-201ENST00000585406 838 ntBASIC18.96■□□□□ 0.63
MRE11P49959 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
MRE11P49959 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC18.96■□□□□ 0.63
MRE11P49959 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC18.96■□□□□ 0.63
MRE11P49959 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC18.96■□□□□ 0.63
MRE11P49959 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
MRE11P49959 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
MRE11P49959 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
MRE11P49959 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
MRE11P49959 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
MRE11P49959 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC18.96■□□□□ 0.63
MRE11P49959 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
MRE11P49959 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
MRE11P49959 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
MRE11P49959 AC006277.1-201ENST00000624348 1610 ntBASIC18.96■□□□□ 0.63
MRE11P49959 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
MRE11P49959 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms