Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC14.34□□□□□ -0.11
SOX2P48431 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SOX2P48431 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
SOX2P48431 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC14.34□□□□□ -0.11
SOX2P48431 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
SOX2P48431 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SOX2P48431 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SOX2P48431 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
SOX2P48431 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC14.34□□□□□ -0.11
SOX2P48431 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
SOX2P48431 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC14.34□□□□□ -0.11
SOX2P48431 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC14.34□□□□□ -0.11
SOX2P48431 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
SOX2P48431 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC14.34□□□□□ -0.11
SOX2P48431 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC14.34□□□□□ -0.11
SOX2P48431 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC14.34□□□□□ -0.11
SOX2P48431 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SOX2P48431 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SOX2P48431 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.11
SOX2P48431 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
SOX2P48431 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.11
SOX2P48431 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC14.33□□□□□ -0.11
SOX2P48431 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC14.33□□□□□ -0.11
SOX2P48431 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
SOX2P48431 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
SOX2P48431 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
SOX2P48431 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
SOX2P48431 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
SOX2P48431 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
SOX2P48431 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.12
SOX2P48431 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SOX2P48431 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SOX2P48431 AL592424.1-201ENST00000563624 1536 ntBASIC14.33□□□□□ -0.12
SOX2P48431 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SOX2P48431 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC14.33□□□□□ -0.12
SOX2P48431 ARL16-209ENST00000573715 763 ntTSL 3 BASIC14.33□□□□□ -0.12
SOX2P48431 ARL16-211ENST00000576135 694 ntTSL 3 BASIC14.33□□□□□ -0.12
SOX2P48431 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
SOX2P48431 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC14.33□□□□□ -0.12
SOX2P48431 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SOX2P48431 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SOX2P48431 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
SOX2P48431 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
SOX2P48431 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC14.33□□□□□ -0.12
SOX2P48431 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC14.33□□□□□ -0.12
SOX2P48431 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC14.33□□□□□ -0.12
SOX2P48431 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SOX2P48431 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
SOX2P48431 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
SOX2P48431 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
SOX2P48431 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SOX2P48431 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
SOX2P48431 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SOX2P48431 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
SOX2P48431 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SOX2P48431 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SOX2P48431 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC14.32□□□□□ -0.12
SOX2P48431 OR2I1P-209ENST00000641730 5365 ntBASIC14.32□□□□□ -0.12
SOX2P48431 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC14.32□□□□□ -0.12
SOX2P48431 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC14.32□□□□□ -0.12
SOX2P48431 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC14.32□□□□□ -0.12
SOX2P48431 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SOX2P48431 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SOX2P48431 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SOX2P48431 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SOX2P48431 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC14.32□□□□□ -0.12
SOX2P48431 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC14.32□□□□□ -0.12
SOX2P48431 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SOX2P48431 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
SOX2P48431 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC14.32□□□□□ -0.12
SOX2P48431 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC14.32□□□□□ -0.12
SOX2P48431 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC14.32□□□□□ -0.12
SOX2P48431 RPS15P9-201ENST00000494093 319 ntBASIC14.32□□□□□ -0.12
SOX2P48431 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SOX2P48431 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC14.32□□□□□ -0.12
SOX2P48431 AC091076.1-201ENST00000610741 619 ntBASIC14.32□□□□□ -0.12
SOX2P48431 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
SOX2P48431 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SOX2P48431 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC14.32□□□□□ -0.12
SOX2P48431 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SOX2P48431 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SOX2P48431 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC14.32□□□□□ -0.12
SOX2P48431 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC14.32□□□□□ -0.12
SOX2P48431 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SOX2P48431 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
SOX2P48431 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
SOX2P48431 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SOX2P48431 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SOX2P48431 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SOX2P48431 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC14.32□□□□□ -0.12
SOX2P48431 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC14.32□□□□□ -0.12
SOX2P48431 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SOX2P48431 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SOX2P48431 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC14.32□□□□□ -0.12
SOX2P48431 MST1L-201ENST00000442552 2185 ntBASIC14.32□□□□□ -0.12
SOX2P48431 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
SOX2P48431 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC14.31□□□□□ -0.12
SOX2P48431 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC14.31□□□□□ -0.12
SOX2P48431 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SOX2P48431 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms