Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
NKX2-1P43699 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
NKX2-1P43699 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
NKX2-1P43699 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
NKX2-1P43699 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
NKX2-1P43699 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC13.34□□□□□ -0.27
NKX2-1P43699 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC13.34□□□□□ -0.27
NKX2-1P43699 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
NKX2-1P43699 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
NKX2-1P43699 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
NKX2-1P43699 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC13.34□□□□□ -0.27
NKX2-1P43699 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
NKX2-1P43699 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
NKX2-1P43699 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC13.33□□□□□ -0.27
NKX2-1P43699 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC13.33□□□□□ -0.27
NKX2-1P43699 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
NKX2-1P43699 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
NKX2-1P43699 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
NKX2-1P43699 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC13.33□□□□□ -0.27
NKX2-1P43699 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
NKX2-1P43699 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
NKX2-1P43699 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
NKX2-1P43699 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.27
NKX2-1P43699 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
NKX2-1P43699 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
NKX2-1P43699 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
NKX2-1P43699 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
NKX2-1P43699 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
NKX2-1P43699 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
NKX2-1P43699 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
NKX2-1P43699 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
NKX2-1P43699 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC13.33□□□□□ -0.28
NKX2-1P43699 NCF1C-201ENST00000438382 1427 ntBASIC13.33□□□□□ -0.28
NKX2-1P43699 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC13.33□□□□□ -0.28
NKX2-1P43699 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
NKX2-1P43699 POLL-217ENST00000628479 1953 ntTSL 5 BASIC13.33□□□□□ -0.28
NKX2-1P43699 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC13.33□□□□□ -0.28
NKX2-1P43699 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
NKX2-1P43699 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
NKX2-1P43699 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
NKX2-1P43699 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
NKX2-1P43699 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC13.33□□□□□ -0.28
NKX2-1P43699 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC13.33□□□□□ -0.28
NKX2-1P43699 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC13.33□□□□□ -0.28
NKX2-1P43699 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC13.33□□□□□ -0.28
NKX2-1P43699 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
NKX2-1P43699 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC13.33□□□□□ -0.28
NKX2-1P43699 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC13.33□□□□□ -0.28
NKX2-1P43699 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
NKX2-1P43699 NME3-204ENST00000563498 920 ntTSL 2 BASIC13.33□□□□□ -0.28
NKX2-1P43699 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC13.33□□□□□ -0.28
NKX2-1P43699 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
NKX2-1P43699 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
NKX2-1P43699 AP001350.2-201ENST00000625104 1094 ntBASIC13.33□□□□□ -0.28
NKX2-1P43699 AL121956.5-201ENST00000625261 221 ntBASIC13.33□□□□□ -0.28
NKX2-1P43699 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC13.33□□□□□ -0.28
NKX2-1P43699 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC13.33□□□□□ -0.28
NKX2-1P43699 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
NKX2-1P43699 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
NKX2-1P43699 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
NKX2-1P43699 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
NKX2-1P43699 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
NKX2-1P43699 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
NKX2-1P43699 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
NKX2-1P43699 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
NKX2-1P43699 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC13.33□□□□□ -0.28
NKX2-1P43699 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
NKX2-1P43699 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC13.33□□□□□ -0.28
NKX2-1P43699 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC13.33□□□□□ -0.28
NKX2-1P43699 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
NKX2-1P43699 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
NKX2-1P43699 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
NKX2-1P43699 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
NKX2-1P43699 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC13.33□□□□□ -0.28
NKX2-1P43699 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
NKX2-1P43699 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
NKX2-1P43699 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
NKX2-1P43699 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
NKX2-1P43699 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC13.33□□□□□ -0.28
NKX2-1P43699 AC233702.3-201ENST00000578656 1387 ntBASIC13.32□□□□□ -0.28
NKX2-1P43699 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC13.32□□□□□ -0.28
NKX2-1P43699 AC138035.3-201ENST00000622706 2791 ntBASIC13.32□□□□□ -0.28
NKX2-1P43699 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
NKX2-1P43699 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
NKX2-1P43699 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
NKX2-1P43699 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
NKX2-1P43699 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
NKX2-1P43699 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
NKX2-1P43699 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC13.32□□□□□ -0.28
NKX2-1P43699 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC13.32□□□□□ -0.28
NKX2-1P43699 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
NKX2-1P43699 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
NKX2-1P43699 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
NKX2-1P43699 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
NKX2-1P43699 GSN-206ENST00000394353 2311 ntTSL 2 BASIC13.32□□□□□ -0.28
NKX2-1P43699 GUK1-204ENST00000366721 689 ntTSL 3 BASIC13.32□□□□□ -0.28
NKX2-1P43699 PAWRP1-201ENST00000451083 565 ntBASIC13.32□□□□□ -0.28
NKX2-1P43699 BX276092.5-203ENST00000456199 560 ntBASIC13.32□□□□□ -0.28
NKX2-1P43699 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC13.32□□□□□ -0.28
NKX2-1P43699 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms