Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
PTPN9P43378 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PTPN9P43378 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
PTPN9P43378 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
PTPN9P43378 AC007950.2-201ENST00000615045 2347 ntBASIC16.81■□□□□ 0.28
PTPN9P43378 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PTPN9P43378 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PTPN9P43378 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PTPN9P43378 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC16.81■□□□□ 0.28
PTPN9P43378 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC16.8■□□□□ 0.28
PTPN9P43378 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PTPN9P43378 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PTPN9P43378 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PTPN9P43378 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
PTPN9P43378 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
PTPN9P43378 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC16.8■□□□□ 0.28
PTPN9P43378 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC16.8■□□□□ 0.28
PTPN9P43378 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PTPN9P43378 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PTPN9P43378 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PTPN9P43378 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC16.8■□□□□ 0.28
PTPN9P43378 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PTPN9P43378 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC16.8■□□□□ 0.28
PTPN9P43378 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PTPN9P43378 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
PTPN9P43378 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
PTPN9P43378 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
PTPN9P43378 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PTPN9P43378 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PTPN9P43378 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
PTPN9P43378 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PTPN9P43378 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC16.8■□□□□ 0.28
PTPN9P43378 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC16.8■□□□□ 0.28
PTPN9P43378 HLA-J-203ENST00000494367 1087 ntBASIC16.8■□□□□ 0.28
PTPN9P43378 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PTPN9P43378 BANF1P1-201ENST00000553684 263 ntBASIC16.8■□□□□ 0.28
PTPN9P43378 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC16.8■□□□□ 0.28
PTPN9P43378 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC16.8■□□□□ 0.28
PTPN9P43378 AC007967.4-201ENST00000614700 386 ntBASIC16.8■□□□□ 0.28
PTPN9P43378 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC16.8■□□□□ 0.28
PTPN9P43378 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PTPN9P43378 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC16.8■□□□□ 0.28
PTPN9P43378 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PTPN9P43378 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC16.8■□□□□ 0.28
PTPN9P43378 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
PTPN9P43378 BNIP3P1-202ENST00000550043 1585 ntBASIC16.8■□□□□ 0.28
PTPN9P43378 CYP4F24P-201ENST00000586049 1580 ntBASIC16.8■□□□□ 0.28
PTPN9P43378 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PTPN9P43378 AP005117.1-202ENST00000581724 1908 ntBASIC16.8■□□□□ 0.28
PTPN9P43378 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PTPN9P43378 ZBTB45P2-201ENST00000452245 1531 ntBASIC16.8■□□□□ 0.28
PTPN9P43378 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PTPN9P43378 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PTPN9P43378 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC16.8■□□□□ 0.28
PTPN9P43378 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC16.8■□□□□ 0.28
PTPN9P43378 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN9P43378 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
PTPN9P43378 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN9P43378 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC16.79■□□□□ 0.28
PTPN9P43378 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN9P43378 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC16.79■□□□□ 0.28
PTPN9P43378 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN9P43378 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN9P43378 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC16.79■□□□□ 0.28
PTPN9P43378 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN9P43378 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
PTPN9P43378 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN9P43378 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN9P43378 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN9P43378 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
PTPN9P43378 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN9P43378 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC16.79■□□□□ 0.28
PTPN9P43378 EEF1DP4-201ENST00000446006 880 ntBASIC16.79■□□□□ 0.28
PTPN9P43378 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN9P43378 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC16.79■□□□□ 0.28
PTPN9P43378 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC16.79■□□□□ 0.28
PTPN9P43378 EHF-205ENST00000527935 557 ntTSL 2 BASIC16.79■□□□□ 0.28
PTPN9P43378 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC16.79■□□□□ 0.28
PTPN9P43378 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC16.79■□□□□ 0.28
PTPN9P43378 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC16.79■□□□□ 0.28
PTPN9P43378 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC16.79■□□□□ 0.28
PTPN9P43378 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN9P43378 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN9P43378 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN9P43378 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN9P43378 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
PTPN9P43378 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
PTPN9P43378 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTPN9P43378 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
PTPN9P43378 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC16.79■□□□□ 0.28
PTPN9P43378 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC16.79■□□□□ 0.28
PTPN9P43378 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
PTPN9P43378 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN9P43378 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN9P43378 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
PTPN9P43378 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN9P43378 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTPN9P43378 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC16.78■□□□□ 0.28
PTPN9P43378 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC16.78■□□□□ 0.28
PTPN9P43378 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 70.8 ms