Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 PMS2P2-201ENST00000425039 1128 ntBASIC15.31■□□□□ 0.04
SOX3P41225 AC023141.5-201ENST00000458585 616 ntBASIC15.31■□□□□ 0.04
SOX3P41225 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC15.31■□□□□ 0.04
SOX3P41225 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC15.31■□□□□ 0.04
SOX3P41225 RNF34-208ENST00000555076 593 ntTSL 3 BASIC15.31■□□□□ 0.04
SOX3P41225 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC15.31■□□□□ 0.04
SOX3P41225 INO80E-210ENST00000567705 880 ntTSL 3 BASIC15.31■□□□□ 0.04
SOX3P41225 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC15.31■□□□□ 0.04
SOX3P41225 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SOX3P41225 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SOX3P41225 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC15.31■□□□□ 0.04
SOX3P41225 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
SOX3P41225 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SOX3P41225 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
SOX3P41225 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
SOX3P41225 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SOX3P41225 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
SOX3P41225 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC15.31■□□□□ 0.04
SOX3P41225 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SOX3P41225 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SOX3P41225 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SOX3P41225 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SOX3P41225 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
SOX3P41225 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC15.31■□□□□ 0.04
SOX3P41225 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC15.31■□□□□ 0.04
SOX3P41225 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
SOX3P41225 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
SOX3P41225 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SOX3P41225 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SOX3P41225 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SOX3P41225 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SOX3P41225 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SOX3P41225 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SOX3P41225 AC092384.3-202ENST00000564646 2873 ntBASIC15.3■□□□□ 0.04
SOX3P41225 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
SOX3P41225 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SOX3P41225 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC15.3■□□□□ 0.04
SOX3P41225 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SOX3P41225 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SOX3P41225 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
SOX3P41225 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SOX3P41225 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC15.3■□□□□ 0.04
SOX3P41225 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
SOX3P41225 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC15.3■□□□□ 0.04
SOX3P41225 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
SOX3P41225 AL627223.1-201ENST00000416693 442 ntBASIC15.3■□□□□ 0.04
SOX3P41225 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC15.3■□□□□ 0.04
SOX3P41225 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC15.3■□□□□ 0.04
SOX3P41225 TSEN15P1-201ENST00000423257 515 ntBASIC15.3■□□□□ 0.04
SOX3P41225 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC15.3■□□□□ 0.04
SOX3P41225 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SOX3P41225 SPCS2P4-201ENST00000436160 681 ntBASIC15.3■□□□□ 0.04
SOX3P41225 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SOX3P41225 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC15.3■□□□□ 0.04
SOX3P41225 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
SOX3P41225 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
SOX3P41225 AC093520.2-201ENST00000561830 333 ntBASIC15.3■□□□□ 0.04
SOX3P41225 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC15.3■□□□□ 0.04
SOX3P41225 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SOX3P41225 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SOX3P41225 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC15.3■□□□□ 0.04
SOX3P41225 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC15.3■□□□□ 0.04
SOX3P41225 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
SOX3P41225 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
SOX3P41225 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SOX3P41225 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SOX3P41225 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SOX3P41225 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SOX3P41225 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC15.29■□□□□ 0.04
SOX3P41225 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SOX3P41225 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SOX3P41225 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SOX3P41225 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SOX3P41225 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SOX3P41225 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SOX3P41225 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SOX3P41225 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SOX3P41225 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
SOX3P41225 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SOX3P41225 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SOX3P41225 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SOX3P41225 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SOX3P41225 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SOX3P41225 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SOX3P41225 AC069335.1-201ENST00000489972 472 ntBASIC15.29■□□□□ 0.04
SOX3P41225 IGHV3-62-201ENST00000520057 340 ntBASIC15.29■□□□□ 0.04
SOX3P41225 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SOX3P41225 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC15.29■□□□□ 0.04
SOX3P41225 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SOX3P41225 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC15.29■□□□□ 0.04
SOX3P41225 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SOX3P41225 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC15.29■□□□□ 0.04
SOX3P41225 AL139011.1-202ENST00000642063 584 ntBASIC15.29■□□□□ 0.04
SOX3P41225 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC15.29■□□□□ 0.04
SOX3P41225 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC15.29■□□□□ 0.04
SOX3P41225 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SOX3P41225 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC15.29■□□□□ 0.04
SOX3P41225 BLK-205ENST00000529894 2017 ntTSL 5 BASIC15.29■□□□□ 0.04
SOX3P41225 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
SOX3P41225 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms