Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
CUX1P39880 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC26.54■■□□□ 1.84
CUX1P39880 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
CUX1P39880 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC26.54■■□□□ 1.84
CUX1P39880 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
CUX1P39880 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC26.54■■□□□ 1.84
CUX1P39880 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
CUX1P39880 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
CUX1P39880 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC26.54■■□□□ 1.84
CUX1P39880 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
CUX1P39880 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
CUX1P39880 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC26.54■■□□□ 1.84
CUX1P39880 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
CUX1P39880 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC26.54■■□□□ 1.84
CUX1P39880 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC26.54■■□□□ 1.84
CUX1P39880 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC26.54■■□□□ 1.84
CUX1P39880 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC26.54■■□□□ 1.84
CUX1P39880 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC26.54■■□□□ 1.84
CUX1P39880 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC26.53■■□□□ 1.84
CUX1P39880 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
CUX1P39880 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC26.53■■□□□ 1.84
CUX1P39880 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC26.53■■□□□ 1.84
CUX1P39880 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
CUX1P39880 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CUX1P39880 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC26.53■■□□□ 1.84
CUX1P39880 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC26.53■■□□□ 1.84
CUX1P39880 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC26.53■■□□□ 1.84
CUX1P39880 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
CUX1P39880 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CUX1P39880 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CUX1P39880 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC26.53■■□□□ 1.84
CUX1P39880 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC26.53■■□□□ 1.84
CUX1P39880 PGGT1BP2-201ENST00000398621 1028 ntBASIC26.53■■□□□ 1.84
CUX1P39880 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC26.53■■□□□ 1.84
CUX1P39880 MIR663B-201ENST00000408361 115 ntBASIC26.53■■□□□ 1.84
CUX1P39880 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC26.53■■□□□ 1.84
CUX1P39880 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC26.53■■□□□ 1.84
CUX1P39880 SCARNA20.5-201ENST00000516991 142 ntBASIC26.53■■□□□ 1.84
CUX1P39880 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC26.53■■□□□ 1.84
CUX1P39880 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC26.53■■□□□ 1.84
CUX1P39880 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
CUX1P39880 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC26.53■■□□□ 1.84
CUX1P39880 AC145423.3-201ENST00000615987 467 ntBASIC26.53■■□□□ 1.84
CUX1P39880 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC26.53■■□□□ 1.84
CUX1P39880 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC26.53■■□□□ 1.84
CUX1P39880 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
CUX1P39880 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC26.52■■□□□ 1.84
CUX1P39880 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC26.52■■□□□ 1.84
CUX1P39880 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
CUX1P39880 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
CUX1P39880 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC26.52■■□□□ 1.84
CUX1P39880 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
CUX1P39880 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC26.52■■□□□ 1.84
CUX1P39880 ACTBP8-201ENST00000403258 1108 ntBASIC26.52■■□□□ 1.84
CUX1P39880 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC26.52■■□□□ 1.84
CUX1P39880 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC26.52■■□□□ 1.84
CUX1P39880 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC26.52■■□□□ 1.84
CUX1P39880 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC26.52■■□□□ 1.84
CUX1P39880 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC26.52■■□□□ 1.84
CUX1P39880 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
CUX1P39880 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
CUX1P39880 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC26.52■■□□□ 1.84
CUX1P39880 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC26.52■■□□□ 1.84
CUX1P39880 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC26.52■■□□□ 1.84
CUX1P39880 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
CUX1P39880 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC26.51■■□□□ 1.83
CUX1P39880 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC26.51■■□□□ 1.83
CUX1P39880 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
CUX1P39880 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
CUX1P39880 SLC25A24P2-201ENST00000415059 510 ntBASIC26.51■■□□□ 1.83
CUX1P39880 CNN2P10-201ENST00000443067 918 ntBASIC26.51■■□□□ 1.83
CUX1P39880 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
CUX1P39880 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC26.51■■□□□ 1.83
CUX1P39880 NEU3-202ENST00000526068 431 ntTSL 2 BASIC26.51■■□□□ 1.83
CUX1P39880 AP001258.2-201ENST00000529891 490 ntBASIC26.51■■□□□ 1.83
CUX1P39880 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC26.51■■□□□ 1.83
CUX1P39880 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC26.51■■□□□ 1.83
CUX1P39880 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
CUX1P39880 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC26.51■■□□□ 1.83
CUX1P39880 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
CUX1P39880 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
CUX1P39880 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC26.51■■□□□ 1.83
CUX1P39880 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC26.51■■□□□ 1.83
CUX1P39880 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC26.51■■□□□ 1.83
CUX1P39880 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
CUX1P39880 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
CUX1P39880 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC26.51■■□□□ 1.83
CUX1P39880 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
CUX1P39880 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
CUX1P39880 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC26.51■■□□□ 1.83
CUX1P39880 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC26.51■■□□□ 1.83
CUX1P39880 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
CUX1P39880 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
CUX1P39880 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
CUX1P39880 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC26.5■■□□□ 1.83
CUX1P39880 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC26.5■■□□□ 1.83
CUX1P39880 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC26.5■■□□□ 1.83
CUX1P39880 MIR1202-201ENST00000408529 83 ntBASIC26.5■■□□□ 1.83
CUX1P39880 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC26.5■■□□□ 1.83
CUX1P39880 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC26.5■■□□□ 1.83
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms