Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC19.95■□□□□ 0.78
COL5A3P25940 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC19.95■□□□□ 0.78
COL5A3P25940 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC19.95■□□□□ 0.78
COL5A3P25940 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC19.95■□□□□ 0.78
COL5A3P25940 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL5A3P25940 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL5A3P25940 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC19.95■□□□□ 0.78
COL5A3P25940 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL5A3P25940 APOA2-204ENST00000464492 530 ntTSL 3 BASIC19.95■□□□□ 0.78
COL5A3P25940 RPSAP36-202ENST00000494591 1261 ntBASIC19.95■□□□□ 0.78
COL5A3P25940 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL5A3P25940 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC19.95■□□□□ 0.78
COL5A3P25940 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL5A3P25940 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL5A3P25940 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC19.95■□□□□ 0.78
COL5A3P25940 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL5A3P25940 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL5A3P25940 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC19.95■□□□□ 0.78
COL5A3P25940 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL5A3P25940 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL5A3P25940 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC19.94■□□□□ 0.78
COL5A3P25940 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL5A3P25940 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC19.94■□□□□ 0.78
COL5A3P25940 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
COL5A3P25940 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL5A3P25940 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
COL5A3P25940 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC19.94■□□□□ 0.78
COL5A3P25940 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC19.94■□□□□ 0.78
COL5A3P25940 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC19.94■□□□□ 0.78
COL5A3P25940 KRT18P25-201ENST00000508931 1278 ntBASIC19.94■□□□□ 0.78
COL5A3P25940 EHF-205ENST00000527935 557 ntTSL 2 BASIC19.94■□□□□ 0.78
COL5A3P25940 AP003171.2-201ENST00000528208 925 ntBASIC19.94■□□□□ 0.78
COL5A3P25940 ACR-203ENST00000529621 708 ntTSL 5 BASIC19.94■□□□□ 0.78
COL5A3P25940 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC19.94■□□□□ 0.78
COL5A3P25940 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC19.94■□□□□ 0.78
COL5A3P25940 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC19.94■□□□□ 0.78
COL5A3P25940 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL5A3P25940 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
COL5A3P25940 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL5A3P25940 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL5A3P25940 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC19.94■□□□□ 0.78
COL5A3P25940 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL5A3P25940 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL5A3P25940 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC19.94■□□□□ 0.78
COL5A3P25940 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL5A3P25940 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL5A3P25940 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL5A3P25940 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
COL5A3P25940 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC19.93■□□□□ 0.78
COL5A3P25940 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC19.93■□□□□ 0.78
COL5A3P25940 REEP1-202ENST00000453231 940 ntTSL 2 BASIC19.93■□□□□ 0.78
COL5A3P25940 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC19.93■□□□□ 0.78
COL5A3P25940 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC19.93■□□□□ 0.78
COL5A3P25940 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC19.93■□□□□ 0.78
COL5A3P25940 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC19.93■□□□□ 0.78
COL5A3P25940 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
COL5A3P25940 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC19.93■□□□□ 0.78
COL5A3P25940 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL5A3P25940 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC19.93■□□□□ 0.78
COL5A3P25940 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC19.93■□□□□ 0.78
COL5A3P25940 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
COL5A3P25940 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL5A3P25940 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
COL5A3P25940 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC19.93■□□□□ 0.78
COL5A3P25940 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL5A3P25940 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
COL5A3P25940 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL5A3P25940 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL5A3P25940 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
COL5A3P25940 ACKR1-201ENST00000368121 1240 ntBASIC19.93■□□□□ 0.78
COL5A3P25940 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL5A3P25940 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC19.93■□□□□ 0.78
COL5A3P25940 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL5A3P25940 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC19.93■□□□□ 0.78
COL5A3P25940 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
COL5A3P25940 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC19.93■□□□□ 0.78
COL5A3P25940 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL5A3P25940 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL5A3P25940 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL5A3P25940 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL5A3P25940 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL5A3P25940 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC19.92■□□□□ 0.78
COL5A3P25940 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
COL5A3P25940 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
COL5A3P25940 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.92■□□□□ 0.78
COL5A3P25940 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL5A3P25940 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL5A3P25940 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL5A3P25940 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL5A3P25940 AC092506.1-202ENST00000401022 528 ntBASIC19.92■□□□□ 0.78
COL5A3P25940 NEU3-202ENST00000526068 431 ntTSL 2 BASIC19.92■□□□□ 0.78
COL5A3P25940 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC19.92■□□□□ 0.78
COL5A3P25940 AC106872.11-201ENST00000605838 421 ntBASIC19.92■□□□□ 0.78
COL5A3P25940 AL022328.3-201ENST00000607943 679 ntBASIC19.92■□□□□ 0.78
COL5A3P25940 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC19.92■□□□□ 0.78
COL5A3P25940 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC19.92■□□□□ 0.78
COL5A3P25940 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
COL5A3P25940 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
COL5A3P25940 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL5A3P25940 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 84.6 ms