Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
VCANP13611 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.44■□□□□ 0.22
VCANP13611 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC16.44■□□□□ 0.22
VCANP13611 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VCANP13611 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC16.44■□□□□ 0.22
VCANP13611 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
VCANP13611 AC012158.2-201ENST00000536546 354 ntBASIC16.44■□□□□ 0.22
VCANP13611 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
VCANP13611 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VCANP13611 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VCANP13611 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC16.44■□□□□ 0.22
VCANP13611 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VCANP13611 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC16.44■□□□□ 0.22
VCANP13611 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VCANP13611 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VCANP13611 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
VCANP13611 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC16.44■□□□□ 0.22
VCANP13611 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VCANP13611 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VCANP13611 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC16.44■□□□□ 0.22
VCANP13611 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC16.44■□□□□ 0.22
VCANP13611 MME-218ENST00000625667 363 ntTSL 5 BASIC16.44■□□□□ 0.22
VCANP13611 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VCANP13611 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VCANP13611 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.44■□□□□ 0.22
VCANP13611 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC16.44■□□□□ 0.22
VCANP13611 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VCANP13611 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VCANP13611 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VCANP13611 AC007274.2-201ENST00000421675 662 ntBASIC16.44■□□□□ 0.22
VCANP13611 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC16.44■□□□□ 0.22
VCANP13611 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VCANP13611 PCDHB17P-201ENST00000539533 2393 ntBASIC16.44■□□□□ 0.22
VCANP13611 AC025271.4-201ENST00000621477 1726 ntBASIC16.44■□□□□ 0.22
VCANP13611 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VCANP13611 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC16.43■□□□□ 0.22
VCANP13611 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VCANP13611 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VCANP13611 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
VCANP13611 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
VCANP13611 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VCANP13611 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VCANP13611 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
VCANP13611 C1QBPP1-201ENST00000400117 770 ntBASIC16.43■□□□□ 0.22
VCANP13611 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VCANP13611 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC16.43■□□□□ 0.22
VCANP13611 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
VCANP13611 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC16.43■□□□□ 0.22
VCANP13611 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC16.43■□□□□ 0.22
VCANP13611 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC16.43■□□□□ 0.22
VCANP13611 PRSS30P-206ENST00000641773 873 ntBASIC16.43■□□□□ 0.22
VCANP13611 AL805961.1-201ENST00000642026 753 ntBASIC16.43■□□□□ 0.22
VCANP13611 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VCANP13611 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VCANP13611 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VCANP13611 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC16.43■□□□□ 0.22
VCANP13611 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VCANP13611 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.43■□□□□ 0.22
VCANP13611 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
VCANP13611 CYP4F24P-201ENST00000586049 1580 ntBASIC16.43■□□□□ 0.22
VCANP13611 AL138709.1-201ENST00000614840 1693 ntBASIC16.43■□□□□ 0.22
VCANP13611 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VCANP13611 C20orf96-202ENST00000382369 1420 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
VCANP13611 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VCANP13611 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VCANP13611 VMO1-203ENST00000416307 712 ntTSL 2 BASIC16.43■□□□□ 0.22
VCANP13611 ACTBP7-201ENST00000418351 1124 ntBASIC16.43■□□□□ 0.22
VCANP13611 AC026410.1-201ENST00000507366 1101 ntBASIC16.43■□□□□ 0.22
VCANP13611 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC16.43■□□□□ 0.22
VCANP13611 BX539320.1-201ENST00000623759 877 ntBASIC16.43■□□□□ 0.22
VCANP13611 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC16.43■□□□□ 0.22
VCANP13611 AC006453.4-201ENST00000636949 1252 ntBASIC16.43■□□□□ 0.22
VCANP13611 PCDH8P1-201ENST00000428983 2773 ntBASIC16.43■□□□□ 0.22
VCANP13611 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VCANP13611 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VCANP13611 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
VCANP13611 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VCANP13611 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VCANP13611 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC16.43■□□□□ 0.22
VCANP13611 DNM1P51-201ENST00000558149 522 ntBASIC16.43■□□□□ 0.22
VCANP13611 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC16.43■□□□□ 0.22
VCANP13611 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
VCANP13611 MIR4649-201ENST00000582839 64 ntBASIC16.43■□□□□ 0.22
VCANP13611 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VCANP13611 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC16.43■□□□□ 0.22
VCANP13611 AC138028.4-201ENST00000564984 1845 ntBASIC16.42■□□□□ 0.22
VCANP13611 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VCANP13611 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VCANP13611 AC019193.1-201ENST00000506678 823 ntBASIC16.42■□□□□ 0.22
VCANP13611 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC16.42■□□□□ 0.22
VCANP13611 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
VCANP13611 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
VCANP13611 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC16.42■□□□□ 0.22
VCANP13611 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VCANP13611 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VCANP13611 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VCANP13611 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VCANP13611 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
VCANP13611 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
VCANP13611 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms