Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
COL3A1P02461 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
COL3A1P02461 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL3A1P02461 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL3A1P02461 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC21.07■□□□□ 0.96
COL3A1P02461 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL3A1P02461 AMT-232ENST00000636199 1546 ntTSL 5 BASIC21.07■□□□□ 0.96
COL3A1P02461 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL3A1P02461 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
COL3A1P02461 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC21.07■□□□□ 0.96
COL3A1P02461 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
COL3A1P02461 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL3A1P02461 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC21.07■□□□□ 0.96
COL3A1P02461 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC21.07■□□□□ 0.96
COL3A1P02461 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC21.07■□□□□ 0.96
COL3A1P02461 GAPDHP21-201ENST00000450301 1010 ntBASIC21.07■□□□□ 0.96
COL3A1P02461 KRT18P43-201ENST00000469825 1281 ntBASIC21.07■□□□□ 0.96
COL3A1P02461 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC21.07■□□□□ 0.96
COL3A1P02461 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
COL3A1P02461 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
COL3A1P02461 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC21.07■□□□□ 0.96
COL3A1P02461 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC21.07■□□□□ 0.96
COL3A1P02461 AC015910.1-201ENST00000579400 975 ntBASIC21.07■□□□□ 0.96
COL3A1P02461 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC21.07■□□□□ 0.96
COL3A1P02461 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL3A1P02461 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC21.06■□□□□ 0.96
COL3A1P02461 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COL3A1P02461 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COL3A1P02461 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL3A1P02461 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC21.06■□□□□ 0.96
COL3A1P02461 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL3A1P02461 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL3A1P02461 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC21.06■□□□□ 0.96
COL3A1P02461 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COL3A1P02461 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COL3A1P02461 AC124283.3-201ENST00000570869 594 ntBASIC21.06■□□□□ 0.96
COL3A1P02461 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL3A1P02461 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL3A1P02461 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC21.06■□□□□ 0.96
COL3A1P02461 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL3A1P02461 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL3A1P02461 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL3A1P02461 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL3A1P02461 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL3A1P02461 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
COL3A1P02461 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC21.05■□□□□ 0.96
COL3A1P02461 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL3A1P02461 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL3A1P02461 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC21.05■□□□□ 0.96
COL3A1P02461 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC21.05■□□□□ 0.96
COL3A1P02461 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
COL3A1P02461 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC21.05■□□□□ 0.96
COL3A1P02461 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC21.05■□□□□ 0.96
COL3A1P02461 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC21.05■□□□□ 0.96
COL3A1P02461 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC21.05■□□□□ 0.96
COL3A1P02461 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC21.05■□□□□ 0.96
COL3A1P02461 AC036164.1-201ENST00000570544 333 ntBASIC21.05■□□□□ 0.96
COL3A1P02461 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC21.05■□□□□ 0.96
COL3A1P02461 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC21.05■□□□□ 0.96
COL3A1P02461 WFDC1-204ENST00000613603 549 ntBASIC21.05■□□□□ 0.96
COL3A1P02461 AL035252.4-201ENST00000624174 288 ntBASIC21.05■□□□□ 0.96
COL3A1P02461 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL3A1P02461 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC21.05■□□□□ 0.96
COL3A1P02461 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
COL3A1P02461 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL3A1P02461 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC21.05■□□□□ 0.96
COL3A1P02461 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL3A1P02461 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC21.05■□□□□ 0.96
COL3A1P02461 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC21.04■□□□□ 0.96
COL3A1P02461 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC21.04■□□□□ 0.96
COL3A1P02461 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC21.04■□□□□ 0.96
COL3A1P02461 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC21.04■□□□□ 0.96
COL3A1P02461 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL3A1P02461 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC21.04■□□□□ 0.96
COL3A1P02461 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL3A1P02461 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL3A1P02461 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
COL3A1P02461 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC21.04■□□□□ 0.96
COL3A1P02461 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC21.04■□□□□ 0.96
COL3A1P02461 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL3A1P02461 PKIG-203ENST00000372887 769 ntTSL 3 BASIC21.04■□□□□ 0.96
COL3A1P02461 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC21.04■□□□□ 0.96
COL3A1P02461 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC21.04■□□□□ 0.96
COL3A1P02461 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC21.04■□□□□ 0.96
COL3A1P02461 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
COL3A1P02461 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC21.04■□□□□ 0.96
COL3A1P02461 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC21.04■□□□□ 0.96
COL3A1P02461 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC21.04■□□□□ 0.96
COL3A1P02461 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL3A1P02461 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL3A1P02461 TKT-202ENST00000423516 2075 ntTSL 2 BASIC21.04■□□□□ 0.96
COL3A1P02461 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL3A1P02461 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
COL3A1P02461 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL3A1P02461 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL3A1P02461 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL3A1P02461 DOC2GP-204ENST00000639052 2548 ntBASIC21.03■□□□□ 0.96
COL3A1P02461 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
COL3A1P02461 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL3A1P02461 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms