Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SIX3O95343 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SIX3O95343 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SIX3O95343 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
SIX3O95343 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC15.87■□□□□ 0.13
SIX3O95343 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC15.86■□□□□ 0.13
SIX3O95343 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC15.86■□□□□ 0.13
SIX3O95343 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC15.86■□□□□ 0.13
SIX3O95343 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC15.86■□□□□ 0.13
SIX3O95343 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SIX3O95343 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SIX3O95343 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SIX3O95343 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC15.86■□□□□ 0.13
SIX3O95343 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
SIX3O95343 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SIX3O95343 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SIX3O95343 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
SIX3O95343 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC15.86■□□□□ 0.13
SIX3O95343 AC013268.4-201ENST00000637413 2228 ntBASIC15.86■□□□□ 0.13
SIX3O95343 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SIX3O95343 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
SIX3O95343 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC15.86■□□□□ 0.13
SIX3O95343 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SIX3O95343 AL589702.1-201ENST00000641229 1509 ntBASIC15.86■□□□□ 0.13
SIX3O95343 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC15.86■□□□□ 0.13
SIX3O95343 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SIX3O95343 HAUS4P1-201ENST00000406739 1145 ntBASIC15.86■□□□□ 0.13
SIX3O95343 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC15.86■□□□□ 0.13
SIX3O95343 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
SIX3O95343 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC15.86■□□□□ 0.13
SIX3O95343 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
SIX3O95343 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC15.86■□□□□ 0.13
SIX3O95343 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
SIX3O95343 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC15.86■□□□□ 0.13
SIX3O95343 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC15.86■□□□□ 0.13
SIX3O95343 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
SIX3O95343 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC15.86■□□□□ 0.13
SIX3O95343 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC15.86■□□□□ 0.13
SIX3O95343 AL513190.1-201ENST00000621254 727 ntBASIC15.86■□□□□ 0.13
SIX3O95343 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC15.86■□□□□ 0.13
SIX3O95343 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
SIX3O95343 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC15.86■□□□□ 0.13
SIX3O95343 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
SIX3O95343 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC15.86■□□□□ 0.13
SIX3O95343 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
SIX3O95343 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC15.86■□□□□ 0.13
SIX3O95343 IL9RP2-201ENST00000423948 1312 ntBASIC15.86■□□□□ 0.13
SIX3O95343 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SIX3O95343 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC15.86■□□□□ 0.13
SIX3O95343 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SIX3O95343 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
SIX3O95343 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SIX3O95343 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC15.85■□□□□ 0.13
SIX3O95343 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SIX3O95343 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC15.85■□□□□ 0.13
SIX3O95343 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC15.85■□□□□ 0.13
SIX3O95343 AC092850.2-201ENST00000623821 2697 ntBASIC15.85■□□□□ 0.13
SIX3O95343 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
SIX3O95343 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SIX3O95343 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SIX3O95343 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
SIX3O95343 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC15.85■□□□□ 0.13
SIX3O95343 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SIX3O95343 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SIX3O95343 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC15.85■□□□□ 0.13
SIX3O95343 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SIX3O95343 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC15.85■□□□□ 0.13
SIX3O95343 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SIX3O95343 LBH-204ENST00000406087 559 ntTSL 4 BASIC15.85■□□□□ 0.13
SIX3O95343 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC15.85■□□□□ 0.13
SIX3O95343 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC15.85■□□□□ 0.13
SIX3O95343 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC15.85■□□□□ 0.13
SIX3O95343 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC15.85■□□□□ 0.13
SIX3O95343 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC15.85■□□□□ 0.13
SIX3O95343 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC15.85■□□□□ 0.13
SIX3O95343 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC15.85■□□□□ 0.13
SIX3O95343 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SIX3O95343 NID2-208ENST00000617139 3827 ntTSL 5 BASIC15.85■□□□□ 0.13
SIX3O95343 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC15.85■□□□□ 0.13
SIX3O95343 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SIX3O95343 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
SIX3O95343 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
SIX3O95343 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
SIX3O95343 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SIX3O95343 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC15.85■□□□□ 0.13
SIX3O95343 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
SIX3O95343 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
SIX3O95343 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC15.85■□□□□ 0.13
SIX3O95343 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC15.85■□□□□ 0.13
SIX3O95343 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SIX3O95343 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SIX3O95343 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
SIX3O95343 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SIX3O95343 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
SIX3O95343 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
SIX3O95343 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SIX3O95343 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC15.84■□□□□ 0.13
SIX3O95343 AC103702.1-201ENST00000548801 2630 ntBASIC15.84■□□□□ 0.13
SIX3O95343 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC15.84■□□□□ 0.13
SIX3O95343 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms