Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LDB3O75112 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC15.26■□□□□ 0.03
LDB3O75112 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC15.26■□□□□ 0.03
LDB3O75112 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDB3O75112 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
LDB3O75112 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDB3O75112 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LDB3O75112 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDB3O75112 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
LDB3O75112 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC15.26■□□□□ 0.03
LDB3O75112 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDB3O75112 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC15.25■□□□□ 0.03
LDB3O75112 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDB3O75112 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDB3O75112 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDB3O75112 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LDB3O75112 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDB3O75112 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDB3O75112 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
LDB3O75112 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDB3O75112 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
LDB3O75112 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
LDB3O75112 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDB3O75112 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDB3O75112 LBH-203ENST00000404397 543 ntTSL 4 BASIC15.25■□□□□ 0.03
LDB3O75112 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC15.25■□□□□ 0.03
LDB3O75112 METTL21AP1-201ENST00000438852 635 ntBASIC15.25■□□□□ 0.03
LDB3O75112 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC15.25■□□□□ 0.03
LDB3O75112 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC15.25■□□□□ 0.03
LDB3O75112 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC15.25■□□□□ 0.03
LDB3O75112 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC15.25■□□□□ 0.03
LDB3O75112 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC15.25■□□□□ 0.03
LDB3O75112 AC004449.1-201ENST00000564240 433 ntBASIC15.25■□□□□ 0.03
LDB3O75112 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDB3O75112 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC15.25■□□□□ 0.03
LDB3O75112 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC15.25■□□□□ 0.03
LDB3O75112 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC15.25■□□□□ 0.03
LDB3O75112 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC15.25■□□□□ 0.03
LDB3O75112 BANP-204ENST00000393208 2283 ntTSL 2 BASIC15.25■□□□□ 0.03
LDB3O75112 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDB3O75112 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
LDB3O75112 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDB3O75112 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC15.25■□□□□ 0.03
LDB3O75112 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC15.25■□□□□ 0.03
LDB3O75112 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDB3O75112 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDB3O75112 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDB3O75112 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDB3O75112 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
LDB3O75112 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC15.25■□□□□ 0.03
LDB3O75112 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC15.25■□□□□ 0.03
LDB3O75112 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
LDB3O75112 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LDB3O75112 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LDB3O75112 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC15.24■□□□□ 0.03
LDB3O75112 AC026691.1-201ENST00000602502 2017 ntBASIC15.24■□□□□ 0.03
LDB3O75112 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC15.24■□□□□ 0.03
LDB3O75112 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LDB3O75112 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
LDB3O75112 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDB3O75112 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC15.24■□□□□ 0.03
LDB3O75112 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC15.24■□□□□ 0.03
LDB3O75112 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC15.24■□□□□ 0.03
LDB3O75112 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDB3O75112 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC15.24■□□□□ 0.03
LDB3O75112 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LDB3O75112 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LDB3O75112 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
LDB3O75112 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
LDB3O75112 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LDB3O75112 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDB3O75112 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDB3O75112 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDB3O75112 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDB3O75112 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDB3O75112 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDB3O75112 HNRNPFP1-201ENST00000391730 1133 ntBASIC15.24■□□□□ 0.03
LDB3O75112 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC15.24■□□□□ 0.03
LDB3O75112 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC15.24■□□□□ 0.03
LDB3O75112 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LDB3O75112 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC15.24■□□□□ 0.03
LDB3O75112 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC15.24■□□□□ 0.03
LDB3O75112 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC15.24■□□□□ 0.03
LDB3O75112 AC003101.2-201ENST00000612557 442 ntBASIC15.24■□□□□ 0.03
LDB3O75112 AC018529.1-201ENST00000613063 361 ntBASIC15.24■□□□□ 0.03
LDB3O75112 MIR6080-201ENST00000617359 66 ntBASIC15.24■□□□□ 0.03
LDB3O75112 AP001059.3-201ENST00000619053 235 ntBASIC15.24■□□□□ 0.03
LDB3O75112 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDB3O75112 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDB3O75112 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC15.24■□□□□ 0.03
LDB3O75112 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDB3O75112 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
LDB3O75112 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LDB3O75112 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
LDB3O75112 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC15.24■□□□□ 0.03
LDB3O75112 AL513523.2-202ENST00000427283 2040 ntBASIC15.24■□□□□ 0.03
LDB3O75112 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC15.24■□□□□ 0.03
LDB3O75112 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC15.24■□□□□ 0.03
LDB3O75112 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
LDB3O75112 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms