Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC24.71■■□□□ 1.55
PCDHA3Q9Y5H8 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
PCDHA3Q9Y5H8 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
PCDHA3Q9Y5H8 CEP120-209ENST00000515110 606 ntTSL 3 BASIC24.71■■□□□ 1.55
PCDHA3Q9Y5H8 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC24.71■■□□□ 1.55
PCDHA3Q9Y5H8 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC24.71■■□□□ 1.55
PCDHA3Q9Y5H8 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC24.71■■□□□ 1.55
PCDHA3Q9Y5H8 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC24.71■■□□□ 1.55
PCDHA3Q9Y5H8 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
PCDHA3Q9Y5H8 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
PCDHA3Q9Y5H8 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
PCDHA3Q9Y5H8 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
PCDHA3Q9Y5H8 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC24.7■■□□□ 1.54
PCDHA3Q9Y5H8 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC24.7■■□□□ 1.54
PCDHA3Q9Y5H8 AC007029.1-201ENST00000604183 313 ntBASIC24.7■■□□□ 1.54
PCDHA3Q9Y5H8 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
PCDHA3Q9Y5H8 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
PCDHA3Q9Y5H8 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
PCDHA3Q9Y5H8 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC24.69■■□□□ 1.54
PCDHA3Q9Y5H8 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC24.69■■□□□ 1.54
PCDHA3Q9Y5H8 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC24.69■■□□□ 1.54
PCDHA3Q9Y5H8 MIR6089-201ENST00000616698 64 ntBASIC24.69■■□□□ 1.54
PCDHA3Q9Y5H8 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
PCDHA3Q9Y5H8 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC24.69■■□□□ 1.54
PCDHA3Q9Y5H8 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC24.69■■□□□ 1.54
PCDHA3Q9Y5H8 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
PCDHA3Q9Y5H8 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
PCDHA3Q9Y5H8 AC141586.4-201ENST00000624558 1573 ntBASIC24.68■■□□□ 1.54
PCDHA3Q9Y5H8 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC24.68■■□□□ 1.54
PCDHA3Q9Y5H8 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC24.68■■□□□ 1.54
PCDHA3Q9Y5H8 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
PCDHA3Q9Y5H8 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
PCDHA3Q9Y5H8 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC24.68■■□□□ 1.54
PCDHA3Q9Y5H8 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
PCDHA3Q9Y5H8 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
PCDHA3Q9Y5H8 LSR-205ENST00000427250 1606 ntTSL 2 BASIC24.68■■□□□ 1.54
PCDHA3Q9Y5H8 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
PCDHA3Q9Y5H8 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
PCDHA3Q9Y5H8 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC24.67■■□□□ 1.54
PCDHA3Q9Y5H8 GFER-205ENST00000569451 517 ntTSL 5 BASIC24.67■■□□□ 1.54
PCDHA3Q9Y5H8 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC24.67■■□□□ 1.54
PCDHA3Q9Y5H8 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
PCDHA3Q9Y5H8 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC24.67■■□□□ 1.54
PCDHA3Q9Y5H8 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC24.66■■□□□ 1.54
PCDHA3Q9Y5H8 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC24.66■■□□□ 1.54
PCDHA3Q9Y5H8 RAP2CP1-202ENST00000605179 643 ntBASIC24.66■■□□□ 1.54
PCDHA3Q9Y5H8 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
PCDHA3Q9Y5H8 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC24.66■■□□□ 1.54
PCDHA3Q9Y5H8 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
PCDHA3Q9Y5H8 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
PCDHA3Q9Y5H8 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC24.65■■□□□ 1.54
PCDHA3Q9Y5H8 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
PCDHA3Q9Y5H8 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
PCDHA3Q9Y5H8 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
PCDHA3Q9Y5H8 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC24.64■■□□□ 1.54
PCDHA3Q9Y5H8 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC24.64■■□□□ 1.54
PCDHA3Q9Y5H8 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC24.64■■□□□ 1.53
PCDHA3Q9Y5H8 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
PCDHA3Q9Y5H8 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC24.63■■□□□ 1.53
PCDHA3Q9Y5H8 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC24.63■■□□□ 1.53
PCDHA3Q9Y5H8 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
PCDHA3Q9Y5H8 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
PCDHA3Q9Y5H8 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
PCDHA3Q9Y5H8 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC24.63■■□□□ 1.53
PCDHA3Q9Y5H8 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC24.62■■□□□ 1.53
PCDHA3Q9Y5H8 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC24.62■■□□□ 1.53
PCDHA3Q9Y5H8 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC24.62■■□□□ 1.53
PCDHA3Q9Y5H8 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC24.62■■□□□ 1.53
PCDHA3Q9Y5H8 HES4-202ENST00000428771 1040 ntTSL 2 BASIC24.62■■□□□ 1.53
PCDHA3Q9Y5H8 MIR4449-201ENST00000578365 66 ntBASIC24.62■■□□□ 1.53
PCDHA3Q9Y5H8 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC24.62■■□□□ 1.53
PCDHA3Q9Y5H8 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
PCDHA3Q9Y5H8 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC24.61■■□□□ 1.53
PCDHA3Q9Y5H8 AC026202.3-201ENST00000600805 1127 ntBASIC24.61■■□□□ 1.53
PCDHA3Q9Y5H8 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC24.61■■□□□ 1.53
PCDHA3Q9Y5H8 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
PCDHA3Q9Y5H8 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
PCDHA3Q9Y5H8 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
PCDHA3Q9Y5H8 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC24.6■■□□□ 1.53
PCDHA3Q9Y5H8 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
PCDHA3Q9Y5H8 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
PCDHA3Q9Y5H8 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC24.6■■□□□ 1.53
PCDHA3Q9Y5H8 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC24.59■■□□□ 1.53
PCDHA3Q9Y5H8 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
PCDHA3Q9Y5H8 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
PCDHA3Q9Y5H8 GPX1-201ENST00000419349 1106 ntBASIC24.59■■□□□ 1.53
PCDHA3Q9Y5H8 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC24.59■■□□□ 1.53
PCDHA3Q9Y5H8 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
PCDHA3Q9Y5H8 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
PCDHA3Q9Y5H8 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
PCDHA3Q9Y5H8 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC24.58■■□□□ 1.53
PCDHA3Q9Y5H8 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
PCDHA3Q9Y5H8 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
PCDHA3Q9Y5H8 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC24.58■■□□□ 1.53
PCDHA3Q9Y5H8 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
PCDHA3Q9Y5H8 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC24.58■■□□□ 1.52
PCDHA3Q9Y5H8 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
PCDHA3Q9Y5H8 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
PCDHA3Q9Y5H8 KRT18P10-201ENST00000388836 1287 ntBASIC24.57■■□□□ 1.52
PCDHA3Q9Y5H8 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC24.57■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms