Protein–RNA interactions for Protein: Q9BY42

RTFDC1, Protein RTF2 homolog, humanhuman

Predicted RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1Q9BY42 QDPR-206ENST00000508623 601 ntTSL 3 BASIC29.17■■■□□ 2.26
RTFDC1Q9BY42 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC29.17■■■□□ 2.26
RTFDC1Q9BY42 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
RTFDC1Q9BY42 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC29.16■■■□□ 2.26
RTFDC1Q9BY42 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC29.16■■■□□ 2.26
RTFDC1Q9BY42 AC133561.4-201ENST00000566112 224 ntBASIC29.16■■■□□ 2.26
RTFDC1Q9BY42 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
RTFDC1Q9BY42 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
RTFDC1Q9BY42 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC29.16■■■□□ 2.26
RTFDC1Q9BY42 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC29.15■■■□□ 2.26
RTFDC1Q9BY42 AC096631.2-201ENST00000436136 790 ntBASIC29.15■■■□□ 2.26
RTFDC1Q9BY42 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC29.15■■■□□ 2.26
RTFDC1Q9BY42 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC29.15■■■□□ 2.26
RTFDC1Q9BY42 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC29.15■■■□□ 2.26
RTFDC1Q9BY42 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
RTFDC1Q9BY42 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC29.14■■■□□ 2.26
RTFDC1Q9BY42 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
RTFDC1Q9BY42 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
RTFDC1Q9BY42 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC29.13■■■□□ 2.25
RTFDC1Q9BY42 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC29.13■■■□□ 2.25
RTFDC1Q9BY42 SHF-208ENST00000560734 1731 ntTSL 3 BASIC29.13■■■□□ 2.25
RTFDC1Q9BY42 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC29.12■■■□□ 2.25
RTFDC1Q9BY42 SNAI3-AS1-204ENST00000567997 2048 ntBASIC29.12■■■□□ 2.25
RTFDC1Q9BY42 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC29.12■■■□□ 2.25
RTFDC1Q9BY42 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC29.12■■■□□ 2.25
RTFDC1Q9BY42 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
RTFDC1Q9BY42 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC29.12■■■□□ 2.25
RTFDC1Q9BY42 AF131216.4-201ENST00000638924 1588 ntBASIC29.11■■■□□ 2.25
RTFDC1Q9BY42 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC29.11■■■□□ 2.25
RTFDC1Q9BY42 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC29.1■■■□□ 2.25
RTFDC1Q9BY42 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC29.1■■■□□ 2.25
RTFDC1Q9BY42 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC29.1■■■□□ 2.25
RTFDC1Q9BY42 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC29.1■■■□□ 2.25
RTFDC1Q9BY42 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC29.1■■■□□ 2.25
RTFDC1Q9BY42 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC29.1■■■□□ 2.25
RTFDC1Q9BY42 CLTA-210ENST00000540080 989 ntTSL 2 BASIC29.1■■■□□ 2.25
RTFDC1Q9BY42 SSSCA1-AS1-201ENST00000567594 614 ntBASIC29.1■■■□□ 2.25
RTFDC1Q9BY42 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC29.1■■■□□ 2.25
RTFDC1Q9BY42 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC29.1■■■□□ 2.25
RTFDC1Q9BY42 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC29.09■■■□□ 2.25
RTFDC1Q9BY42 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC29.09■■■□□ 2.25
RTFDC1Q9BY42 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC29.09■■■□□ 2.25
RTFDC1Q9BY42 RASSF1-AS1-201ENST00000629828 790 ntBASIC29.08■■■□□ 2.25
RTFDC1Q9BY42 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC29.08■■■□□ 2.25
RTFDC1Q9BY42 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC29.08■■■□□ 2.25
RTFDC1Q9BY42 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC29.08■■■□□ 2.25
RTFDC1Q9BY42 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC29.08■■■□□ 2.25
RTFDC1Q9BY42 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
RTFDC1Q9BY42 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC29.07■■■□□ 2.24
RTFDC1Q9BY42 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC29.07■■■□□ 2.24
RTFDC1Q9BY42 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC29.06■■■□□ 2.24
RTFDC1Q9BY42 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC29.05■■■□□ 2.24
RTFDC1Q9BY42 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
RTFDC1Q9BY42 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
RTFDC1Q9BY42 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
RTFDC1Q9BY42 CD72-202ENST00000378430 585 ntTSL 3 BASIC29.04■■■□□ 2.24
RTFDC1Q9BY42 AK3-203ENST00000447596 705 ntTSL 2 BASIC29.04■■■□□ 2.24
RTFDC1Q9BY42 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC29.04■■■□□ 2.24
RTFDC1Q9BY42 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
RTFDC1Q9BY42 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC29.03■■■□□ 2.24
RTFDC1Q9BY42 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
RTFDC1Q9BY42 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
RTFDC1Q9BY42 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC29.03■■■□□ 2.24
RTFDC1Q9BY42 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC29.02■■■□□ 2.24
RTFDC1Q9BY42 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC29.02■■■□□ 2.24
RTFDC1Q9BY42 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC29.01■■■□□ 2.24
RTFDC1Q9BY42 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
RTFDC1Q9BY42 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC29.01■■■□□ 2.23
RTFDC1Q9BY42 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC29.01■■■□□ 2.23
RTFDC1Q9BY42 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC29.01■■■□□ 2.23
RTFDC1Q9BY42 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
RTFDC1Q9BY42 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
RTFDC1Q9BY42 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC29■■■□□ 2.23
RTFDC1Q9BY42 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC29■■■□□ 2.23
RTFDC1Q9BY42 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC29■■■□□ 2.23
RTFDC1Q9BY42 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
RTFDC1Q9BY42 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC28.99■■■□□ 2.23
RTFDC1Q9BY42 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
RTFDC1Q9BY42 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC28.99■■■□□ 2.23
RTFDC1Q9BY42 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC28.99■■■□□ 2.23
RTFDC1Q9BY42 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
RTFDC1Q9BY42 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC28.98■■■□□ 2.23
RTFDC1Q9BY42 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC28.98■■■□□ 2.23
RTFDC1Q9BY42 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC28.98■■■□□ 2.23
RTFDC1Q9BY42 TFPT-201ENST00000391757 774 ntTSL 5 BASIC28.97■■■□□ 2.23
RTFDC1Q9BY42 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC28.97■■■□□ 2.23
RTFDC1Q9BY42 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC28.97■■■□□ 2.23
RTFDC1Q9BY42 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
RTFDC1Q9BY42 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC28.97■■■□□ 2.23
RTFDC1Q9BY42 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
RTFDC1Q9BY42 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC28.96■■■□□ 2.23
RTFDC1Q9BY42 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC28.96■■■□□ 2.23
RTFDC1Q9BY42 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC28.96■■■□□ 2.23
RTFDC1Q9BY42 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC28.96■■■□□ 2.23
RTFDC1Q9BY42 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
RTFDC1Q9BY42 AC106739.1-201ENST00000617035 715 ntBASIC28.96■■■□□ 2.23
RTFDC1Q9BY42 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC28.96■■■□□ 2.23
RTFDC1Q9BY42 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
RTFDC1Q9BY42 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
RTFDC1Q9BY42 EBPL-204ENST00000378272 766 ntTSL 3 BASIC28.95■■■□□ 2.22
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms