Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
DEPDC4Q8N2C3 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
DEPDC4Q8N2C3 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
DEPDC4Q8N2C3 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC21.77■■□□□ 1.08
DEPDC4Q8N2C3 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC21.77■■□□□ 1.08
DEPDC4Q8N2C3 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
DEPDC4Q8N2C3 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
DEPDC4Q8N2C3 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
DEPDC4Q8N2C3 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
DEPDC4Q8N2C3 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
DEPDC4Q8N2C3 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
DEPDC4Q8N2C3 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
DEPDC4Q8N2C3 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
DEPDC4Q8N2C3 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC21.76■■□□□ 1.07
DEPDC4Q8N2C3 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC21.76■■□□□ 1.07
DEPDC4Q8N2C3 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
DEPDC4Q8N2C3 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC21.75■■□□□ 1.07
DEPDC4Q8N2C3 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC21.75■■□□□ 1.07
DEPDC4Q8N2C3 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
DEPDC4Q8N2C3 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC21.75■■□□□ 1.07
DEPDC4Q8N2C3 LINC00543-201ENST00000567234 1845 ntBASIC21.75■■□□□ 1.07
DEPDC4Q8N2C3 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
DEPDC4Q8N2C3 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
DEPDC4Q8N2C3 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
DEPDC4Q8N2C3 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC21.74■■□□□ 1.07
DEPDC4Q8N2C3 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC21.74■■□□□ 1.07
DEPDC4Q8N2C3 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
DEPDC4Q8N2C3 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
DEPDC4Q8N2C3 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
DEPDC4Q8N2C3 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
DEPDC4Q8N2C3 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC21.73■■□□□ 1.07
DEPDC4Q8N2C3 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
DEPDC4Q8N2C3 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
DEPDC4Q8N2C3 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC21.73■■□□□ 1.07
DEPDC4Q8N2C3 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
DEPDC4Q8N2C3 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
DEPDC4Q8N2C3 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
DEPDC4Q8N2C3 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
DEPDC4Q8N2C3 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC21.72■■□□□ 1.07
DEPDC4Q8N2C3 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
DEPDC4Q8N2C3 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC21.72■■□□□ 1.07
DEPDC4Q8N2C3 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
DEPDC4Q8N2C3 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC21.72■■□□□ 1.07
DEPDC4Q8N2C3 AC141586.4-201ENST00000624558 1573 ntBASIC21.72■■□□□ 1.07
DEPDC4Q8N2C3 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
DEPDC4Q8N2C3 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
DEPDC4Q8N2C3 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC21.71■■□□□ 1.07
DEPDC4Q8N2C3 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
DEPDC4Q8N2C3 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
DEPDC4Q8N2C3 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
DEPDC4Q8N2C3 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
DEPDC4Q8N2C3 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
DEPDC4Q8N2C3 ABHD17AP5-201ENST00000580133 923 ntBASIC21.71■■□□□ 1.07
DEPDC4Q8N2C3 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
DEPDC4Q8N2C3 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
DEPDC4Q8N2C3 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC21.71■■□□□ 1.07
DEPDC4Q8N2C3 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC21.71■■□□□ 1.07
DEPDC4Q8N2C3 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC21.7■■□□□ 1.07
DEPDC4Q8N2C3 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
DEPDC4Q8N2C3 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
DEPDC4Q8N2C3 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
DEPDC4Q8N2C3 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC21.7■■□□□ 1.06
DEPDC4Q8N2C3 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
DEPDC4Q8N2C3 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
DEPDC4Q8N2C3 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
DEPDC4Q8N2C3 AC060814.1-201ENST00000554326 538 ntBASIC21.7■■□□□ 1.06
DEPDC4Q8N2C3 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
DEPDC4Q8N2C3 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
DEPDC4Q8N2C3 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC21.7■■□□□ 1.06
DEPDC4Q8N2C3 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
DEPDC4Q8N2C3 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
DEPDC4Q8N2C3 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
DEPDC4Q8N2C3 AC068473.5-201ENST00000616428 2072 ntBASIC21.69■■□□□ 1.06
DEPDC4Q8N2C3 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC21.69■■□□□ 1.06
DEPDC4Q8N2C3 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
DEPDC4Q8N2C3 CASK-201ENST00000378154 2494 ntTSL 5 BASIC21.69■■□□□ 1.06
DEPDC4Q8N2C3 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
DEPDC4Q8N2C3 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
DEPDC4Q8N2C3 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
DEPDC4Q8N2C3 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.68■■□□□ 1.06
DEPDC4Q8N2C3 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC21.68■■□□□ 1.06
DEPDC4Q8N2C3 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
DEPDC4Q8N2C3 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC21.68■■□□□ 1.06
DEPDC4Q8N2C3 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
DEPDC4Q8N2C3 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
DEPDC4Q8N2C3 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
DEPDC4Q8N2C3 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
DEPDC4Q8N2C3 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
DEPDC4Q8N2C3 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC21.67■■□□□ 1.06
DEPDC4Q8N2C3 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
DEPDC4Q8N2C3 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC21.66■■□□□ 1.06
DEPDC4Q8N2C3 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
DEPDC4Q8N2C3 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
DEPDC4Q8N2C3 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
DEPDC4Q8N2C3 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
DEPDC4Q8N2C3 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
DEPDC4Q8N2C3 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
DEPDC4Q8N2C3 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
DEPDC4Q8N2C3 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC21.65■■□□□ 1.06
DEPDC4Q8N2C3 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms