Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
CCDC60Q8IWA6 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC26.47■■□□□ 1.83
CCDC60Q8IWA6 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
CCDC60Q8IWA6 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC26.46■■□□□ 1.83
CCDC60Q8IWA6 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
CCDC60Q8IWA6 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC26.46■■□□□ 1.83
CCDC60Q8IWA6 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC26.46■■□□□ 1.83
CCDC60Q8IWA6 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC26.46■■□□□ 1.83
CCDC60Q8IWA6 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
CCDC60Q8IWA6 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC26.45■■□□□ 1.83
CCDC60Q8IWA6 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC26.45■■□□□ 1.83
CCDC60Q8IWA6 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
CCDC60Q8IWA6 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC26.45■■□□□ 1.82
CCDC60Q8IWA6 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC26.45■■□□□ 1.82
CCDC60Q8IWA6 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC26.44■■□□□ 1.82
CCDC60Q8IWA6 AC091060.1-201ENST00000623524 1766 ntBASIC26.44■■□□□ 1.82
CCDC60Q8IWA6 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
CCDC60Q8IWA6 Z92544.1-202ENST00000571933 1220 ntBASIC26.44■■□□□ 1.82
CCDC60Q8IWA6 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC26.44■■□□□ 1.82
CCDC60Q8IWA6 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC26.44■■□□□ 1.82
CCDC60Q8IWA6 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC26.43■■□□□ 1.82
CCDC60Q8IWA6 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
CCDC60Q8IWA6 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC26.43■■□□□ 1.82
CCDC60Q8IWA6 MIR4281-201ENST00000580852 62 ntBASIC26.43■■□□□ 1.82
CCDC60Q8IWA6 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC26.43■■□□□ 1.82
CCDC60Q8IWA6 DUSP8P4-201ENST00000399538 1761 ntBASIC26.43■■□□□ 1.82
CCDC60Q8IWA6 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
CCDC60Q8IWA6 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC26.42■■□□□ 1.82
CCDC60Q8IWA6 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
CCDC60Q8IWA6 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC26.42■■□□□ 1.82
CCDC60Q8IWA6 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
CCDC60Q8IWA6 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
CCDC60Q8IWA6 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC26.41■■□□□ 1.82
CCDC60Q8IWA6 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC26.41■■□□□ 1.82
CCDC60Q8IWA6 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC26.41■■□□□ 1.82
CCDC60Q8IWA6 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
CCDC60Q8IWA6 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC26.41■■□□□ 1.82
CCDC60Q8IWA6 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
CCDC60Q8IWA6 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
CCDC60Q8IWA6 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC26.4■■□□□ 1.82
CCDC60Q8IWA6 AC137630.3-201ENST00000607245 391 ntBASIC26.4■■□□□ 1.82
CCDC60Q8IWA6 AC011551.1-201ENST00000614101 683 ntBASIC26.4■■□□□ 1.82
CCDC60Q8IWA6 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
CCDC60Q8IWA6 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC26.39■■□□□ 1.82
CCDC60Q8IWA6 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC26.39■■□□□ 1.82
CCDC60Q8IWA6 BX664725.1-201ENST00000438252 379 ntBASIC26.39■■□□□ 1.82
CCDC60Q8IWA6 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC26.39■■□□□ 1.82
CCDC60Q8IWA6 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC26.39■■□□□ 1.81
CCDC60Q8IWA6 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC26.39■■□□□ 1.81
CCDC60Q8IWA6 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC26.38■■□□□ 1.81
CCDC60Q8IWA6 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
CCDC60Q8IWA6 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC26.38■■□□□ 1.81
CCDC60Q8IWA6 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC26.38■■□□□ 1.81
CCDC60Q8IWA6 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
CCDC60Q8IWA6 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
CCDC60Q8IWA6 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
CCDC60Q8IWA6 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
CCDC60Q8IWA6 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
CCDC60Q8IWA6 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC26.37■■□□□ 1.81
CCDC60Q8IWA6 GAK-223ENST00000628912 497 ntTSL 5 BASIC26.37■■□□□ 1.81
CCDC60Q8IWA6 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
CCDC60Q8IWA6 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
CCDC60Q8IWA6 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC26.36■■□□□ 1.81
CCDC60Q8IWA6 CREM-229ENST00000474362 1030 ntTSL 2 BASIC26.36■■□□□ 1.81
CCDC60Q8IWA6 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC26.36■■□□□ 1.81
CCDC60Q8IWA6 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
CCDC60Q8IWA6 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
CCDC60Q8IWA6 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
CCDC60Q8IWA6 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
CCDC60Q8IWA6 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC26.35■■□□□ 1.81
CCDC60Q8IWA6 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC26.35■■□□□ 1.81
CCDC60Q8IWA6 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC26.35■■□□□ 1.81
CCDC60Q8IWA6 KRT125P-201ENST00000546827 989 ntBASIC26.35■■□□□ 1.81
CCDC60Q8IWA6 SSSCA1-AS1-201ENST00000567594 614 ntBASIC26.35■■□□□ 1.81
CCDC60Q8IWA6 MIR4787-201ENST00000607364 84 ntBASIC26.35■■□□□ 1.81
CCDC60Q8IWA6 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
CCDC60Q8IWA6 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
CCDC60Q8IWA6 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
CCDC60Q8IWA6 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC26.34■■□□□ 1.81
CCDC60Q8IWA6 AC145676.1-201ENST00000514988 2004 ntBASIC26.34■■□□□ 1.81
CCDC60Q8IWA6 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
CCDC60Q8IWA6 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC26.33■■□□□ 1.81
CCDC60Q8IWA6 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC26.33■■□□□ 1.81
CCDC60Q8IWA6 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
CCDC60Q8IWA6 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC26.33■■□□□ 1.81
CCDC60Q8IWA6 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
CCDC60Q8IWA6 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC26.33■■□□□ 1.8
CCDC60Q8IWA6 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.8
CCDC60Q8IWA6 AC021242.3-201ENST00000607598 1377 ntBASIC26.33■■□□□ 1.8
CCDC60Q8IWA6 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC26.32■■□□□ 1.8
CCDC60Q8IWA6 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC26.32■■□□□ 1.8
CCDC60Q8IWA6 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CCDC60Q8IWA6 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC26.32■■□□□ 1.8
CCDC60Q8IWA6 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC26.32■■□□□ 1.8
CCDC60Q8IWA6 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
CCDC60Q8IWA6 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC26.31■■□□□ 1.8
CCDC60Q8IWA6 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC26.31■■□□□ 1.8
CCDC60Q8IWA6 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CCDC60Q8IWA6 AL356441.2-201ENST00000443009 864 ntBASIC26.3■■□□□ 1.8
CCDC60Q8IWA6 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC26.3■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 133.8 ms