Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC14.89□□□□□ -0.03
LINC00643Q86TS7 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC14.89□□□□□ -0.03
LINC00643Q86TS7 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
LINC00643Q86TS7 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LINC00643Q86TS7 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
LINC00643Q86TS7 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LINC00643Q86TS7 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
LINC00643Q86TS7 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LINC00643Q86TS7 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC14.88□□□□□ -0.03
LINC00643Q86TS7 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC14.88□□□□□ -0.03
LINC00643Q86TS7 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LINC00643Q86TS7 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LINC00643Q86TS7 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
LINC00643Q86TS7 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC14.88□□□□□ -0.03
LINC00643Q86TS7 AP002414.2-202ENST00000590929 1450 ntBASIC14.88□□□□□ -0.03
LINC00643Q86TS7 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC14.88□□□□□ -0.03
LINC00643Q86TS7 AC092667.1-201ENST00000434301 2586 ntBASIC14.87□□□□□ -0.03
LINC00643Q86TS7 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC14.87□□□□□ -0.03
LINC00643Q86TS7 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LINC00643Q86TS7 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LINC00643Q86TS7 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LINC00643Q86TS7 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC14.87□□□□□ -0.03
LINC00643Q86TS7 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
LINC00643Q86TS7 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC14.87□□□□□ -0.03
LINC00643Q86TS7 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC14.87□□□□□ -0.03
LINC00643Q86TS7 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
LINC00643Q86TS7 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
LINC00643Q86TS7 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
LINC00643Q86TS7 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LINC00643Q86TS7 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
LINC00643Q86TS7 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LINC00643Q86TS7 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
LINC00643Q86TS7 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LINC00643Q86TS7 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
LINC00643Q86TS7 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC14.86□□□□□ -0.03
LINC00643Q86TS7 DUSP8P3-201ENST00000399571 1760 ntBASIC14.86□□□□□ -0.03
LINC00643Q86TS7 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC14.86□□□□□ -0.03
LINC00643Q86TS7 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LINC00643Q86TS7 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LINC00643Q86TS7 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LINC00643Q86TS7 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LINC00643Q86TS7 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LINC00643Q86TS7 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC14.86□□□□□ -0.03
LINC00643Q86TS7 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LINC00643Q86TS7 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
LINC00643Q86TS7 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LINC00643Q86TS7 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LINC00643Q86TS7 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LINC00643Q86TS7 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LINC00643Q86TS7 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC14.85□□□□□ -0.03
LINC00643Q86TS7 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LINC00643Q86TS7 AC010864.1-201ENST00000609407 1511 ntBASIC14.85□□□□□ -0.03
LINC00643Q86TS7 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC14.85□□□□□ -0.03
LINC00643Q86TS7 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LINC00643Q86TS7 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LINC00643Q86TS7 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
LINC00643Q86TS7 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
LINC00643Q86TS7 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LINC00643Q86TS7 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LINC00643Q86TS7 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
LINC00643Q86TS7 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
LINC00643Q86TS7 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC14.84□□□□□ -0.03
LINC00643Q86TS7 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LINC00643Q86TS7 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LINC00643Q86TS7 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
LINC00643Q86TS7 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
LINC00643Q86TS7 AP004609.3-201ENST00000610705 1884 ntBASIC14.84□□□□□ -0.03
LINC00643Q86TS7 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
LINC00643Q86TS7 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC14.84□□□□□ -0.03
LINC00643Q86TS7 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LINC00643Q86TS7 AC010501.1-201ENST00000606270 1962 ntBASIC14.84□□□□□ -0.03
LINC00643Q86TS7 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC14.84□□□□□ -0.03
LINC00643Q86TS7 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
LINC00643Q86TS7 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
LINC00643Q86TS7 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
LINC00643Q86TS7 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LINC00643Q86TS7 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
LINC00643Q86TS7 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
LINC00643Q86TS7 WWC2-AS2-201ENST00000578387 2183 ntBASIC14.83□□□□□ -0.04
LINC00643Q86TS7 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
LINC00643Q86TS7 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
LINC00643Q86TS7 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LINC00643Q86TS7 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LINC00643Q86TS7 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LINC00643Q86TS7 NFE2L3P1-201ENST00000588207 1959 ntBASIC14.82□□□□□ -0.04
LINC00643Q86TS7 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
LINC00643Q86TS7 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC14.82□□□□□ -0.04
LINC00643Q86TS7 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LINC00643Q86TS7 MVK-208ENST00000539696 608 ntTSL 5 BASIC14.82□□□□□ -0.04
LINC00643Q86TS7 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC14.82□□□□□ -0.04
LINC00643Q86TS7 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC14.82□□□□□ -0.04
LINC00643Q86TS7 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LINC00643Q86TS7 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LINC00643Q86TS7 FOXO3B-201ENST00000395675 1928 ntBASIC14.82□□□□□ -0.04
LINC00643Q86TS7 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LINC00643Q86TS7 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
LINC00643Q86TS7 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC14.81□□□□□ -0.04
LINC00643Q86TS7 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
LINC00643Q86TS7 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
LINC00643Q86TS7 LINC00526-201ENST00000581067 1875 ntBASIC14.81□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 13 ms