Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
CCDC40Q4G0X9 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
CCDC40Q4G0X9 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
CCDC40Q4G0X9 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
CCDC40Q4G0X9 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
CCDC40Q4G0X9 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
CCDC40Q4G0X9 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC25.87■■□□□ 1.73
CCDC40Q4G0X9 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC25.87■■□□□ 1.73
CCDC40Q4G0X9 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC25.87■■□□□ 1.73
CCDC40Q4G0X9 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
CCDC40Q4G0X9 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC25.87■■□□□ 1.73
CCDC40Q4G0X9 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
CCDC40Q4G0X9 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC25.86■■□□□ 1.73
CCDC40Q4G0X9 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC25.86■■□□□ 1.73
CCDC40Q4G0X9 KRT18P10-201ENST00000388836 1287 ntBASIC25.86■■□□□ 1.73
CCDC40Q4G0X9 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC25.86■■□□□ 1.73
CCDC40Q4G0X9 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
CCDC40Q4G0X9 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC25.85■■□□□ 1.73
CCDC40Q4G0X9 HSD17B1P1-201ENST00000590052 955 ntBASIC25.85■■□□□ 1.73
CCDC40Q4G0X9 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
CCDC40Q4G0X9 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC25.84■■□□□ 1.73
CCDC40Q4G0X9 RARRES2P2-201ENST00000394842 485 ntBASIC25.84■■□□□ 1.73
CCDC40Q4G0X9 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC25.84■■□□□ 1.73
CCDC40Q4G0X9 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC25.84■■□□□ 1.73
CCDC40Q4G0X9 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC25.84■■□□□ 1.73
CCDC40Q4G0X9 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC25.84■■□□□ 1.73
CCDC40Q4G0X9 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
CCDC40Q4G0X9 HYI-213ENST00000583037 1322 ntTSL 5 BASIC25.84■■□□□ 1.73
CCDC40Q4G0X9 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
CCDC40Q4G0X9 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
CCDC40Q4G0X9 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
CCDC40Q4G0X9 PREB-202ENST00000406567 1910 ntTSL 5 BASIC25.83■■□□□ 1.73
CCDC40Q4G0X9 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
CCDC40Q4G0X9 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
CCDC40Q4G0X9 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC25.82■■□□□ 1.72
CCDC40Q4G0X9 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC25.82■■□□□ 1.72
CCDC40Q4G0X9 AL592293.1-201ENST00000502889 1188 ntBASIC25.82■■□□□ 1.72
CCDC40Q4G0X9 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
CCDC40Q4G0X9 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
CCDC40Q4G0X9 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
CCDC40Q4G0X9 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC25.81■■□□□ 1.72
CCDC40Q4G0X9 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC25.81■■□□□ 1.72
CCDC40Q4G0X9 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
CCDC40Q4G0X9 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC25.8■■□□□ 1.72
CCDC40Q4G0X9 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC25.8■■□□□ 1.72
CCDC40Q4G0X9 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
CCDC40Q4G0X9 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
CCDC40Q4G0X9 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
CCDC40Q4G0X9 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC25.79■■□□□ 1.72
CCDC40Q4G0X9 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC25.79■■□□□ 1.72
CCDC40Q4G0X9 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
CCDC40Q4G0X9 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
CCDC40Q4G0X9 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
CCDC40Q4G0X9 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC25.79■■□□□ 1.72
CCDC40Q4G0X9 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC25.79■■□□□ 1.72
CCDC40Q4G0X9 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC25.79■■□□□ 1.72
CCDC40Q4G0X9 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
CCDC40Q4G0X9 EED-207ENST00000528180 1745 ntTSL 5 BASIC25.79■■□□□ 1.72
CCDC40Q4G0X9 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
CCDC40Q4G0X9 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
CCDC40Q4G0X9 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC25.78■■□□□ 1.72
CCDC40Q4G0X9 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
CCDC40Q4G0X9 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC25.78■■□□□ 1.72
CCDC40Q4G0X9 LINC01124-201ENST00000409786 2117 ntBASIC25.78■■□□□ 1.72
CCDC40Q4G0X9 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC25.77■■□□□ 1.72
CCDC40Q4G0X9 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC25.77■■□□□ 1.72
CCDC40Q4G0X9 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC25.77■■□□□ 1.72
CCDC40Q4G0X9 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
CCDC40Q4G0X9 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC25.77■■□□□ 1.72
CCDC40Q4G0X9 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC25.77■■□□□ 1.72
CCDC40Q4G0X9 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC25.77■■□□□ 1.72
CCDC40Q4G0X9 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC25.77■■□□□ 1.72
CCDC40Q4G0X9 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC25.76■■□□□ 1.71
CCDC40Q4G0X9 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC25.76■■□□□ 1.71
CCDC40Q4G0X9 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC25.76■■□□□ 1.71
CCDC40Q4G0X9 FOXO3B-201ENST00000395675 1928 ntBASIC25.76■■□□□ 1.71
CCDC40Q4G0X9 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC25.76■■□□□ 1.71
CCDC40Q4G0X9 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
CCDC40Q4G0X9 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC25.75■■□□□ 1.71
CCDC40Q4G0X9 AC018755.3-202ENST00000596210 929 ntBASIC25.75■■□□□ 1.71
CCDC40Q4G0X9 MIR6089-201ENST00000616698 64 ntBASIC25.75■■□□□ 1.71
CCDC40Q4G0X9 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
CCDC40Q4G0X9 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
CCDC40Q4G0X9 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
CCDC40Q4G0X9 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
CCDC40Q4G0X9 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC25.74■■□□□ 1.71
CCDC40Q4G0X9 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC25.74■■□□□ 1.71
CCDC40Q4G0X9 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC25.74■■□□□ 1.71
CCDC40Q4G0X9 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC25.74■■□□□ 1.71
CCDC40Q4G0X9 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC25.74■■□□□ 1.71
CCDC40Q4G0X9 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
CCDC40Q4G0X9 SPCS2P3-201ENST00000500401 656 ntBASIC25.74■■□□□ 1.71
CCDC40Q4G0X9 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC25.74■■□□□ 1.71
CCDC40Q4G0X9 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC25.74■■□□□ 1.71
CCDC40Q4G0X9 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC25.74■■□□□ 1.71
CCDC40Q4G0X9 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
CCDC40Q4G0X9 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC25.73■■□□□ 1.71
CCDC40Q4G0X9 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC25.73■■□□□ 1.71
CCDC40Q4G0X9 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC25.73■■□□□ 1.71
CCDC40Q4G0X9 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC25.73■■□□□ 1.71
Retrieved 100 of 98,524 protein–RNA pairs in 62.9 ms