Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC31.66■■■□□ 2.66
COL3A1P02461 MIR4281-201ENST00000580852 62 ntBASIC31.65■■■□□ 2.66
COL3A1P02461 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC31.65■■■□□ 2.66
COL3A1P02461 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
COL3A1P02461 AC011551.1-201ENST00000614101 683 ntBASIC31.65■■■□□ 2.66
COL3A1P02461 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC31.64■■■□□ 2.66
COL3A1P02461 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC31.64■■■□□ 2.66
COL3A1P02461 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC31.64■■■□□ 2.66
COL3A1P02461 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC31.64■■■□□ 2.66
COL3A1P02461 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC31.64■■■□□ 2.66
COL3A1P02461 KRT18P24-201ENST00000344739 1156 ntBASIC31.64■■■□□ 2.66
COL3A1P02461 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC31.64■■■□□ 2.66
COL3A1P02461 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC31.64■■■□□ 2.65
COL3A1P02461 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
COL3A1P02461 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC31.63■■■□□ 2.65
COL3A1P02461 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
COL3A1P02461 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC31.63■■■□□ 2.65
COL3A1P02461 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC31.62■■■□□ 2.65
COL3A1P02461 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC31.62■■■□□ 2.65
COL3A1P02461 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
COL3A1P02461 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
COL3A1P02461 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
COL3A1P02461 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
COL3A1P02461 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
COL3A1P02461 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC31.61■■■□□ 2.65
COL3A1P02461 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC31.61■■■□□ 2.65
COL3A1P02461 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC31.6■■■□□ 2.65
COL3A1P02461 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC31.6■■■□□ 2.65
COL3A1P02461 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
COL3A1P02461 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
COL3A1P02461 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC31.6■■■□□ 2.65
COL3A1P02461 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
COL3A1P02461 THA1P-201ENST00000590384 1145 ntBASIC31.59■■■□□ 2.65
COL3A1P02461 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC31.58■■■□□ 2.65
COL3A1P02461 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
COL3A1P02461 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC31.57■■■□□ 2.64
COL3A1P02461 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
COL3A1P02461 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC31.55■■■□□ 2.64
COL3A1P02461 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
COL3A1P02461 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC31.54■■■□□ 2.64
COL3A1P02461 OR2A1-AS1-204ENST00000470435 602 ntBASIC31.53■■■□□ 2.64
COL3A1P02461 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC31.53■■■□□ 2.64
COL3A1P02461 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
COL3A1P02461 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
COL3A1P02461 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
COL3A1P02461 GUSBP5-201ENST00000418136 578 ntBASIC31.52■■■□□ 2.64
COL3A1P02461 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC31.52■■■□□ 2.64
COL3A1P02461 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC31.52■■■□□ 2.64
COL3A1P02461 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC31.52■■■□□ 2.64
COL3A1P02461 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
COL3A1P02461 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
COL3A1P02461 RNF146-205ENST00000477776 762 ntTSL 3 BASIC31.52■■■□□ 2.64
COL3A1P02461 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC31.51■■■□□ 2.64
COL3A1P02461 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC31.51■■■□□ 2.63
COL3A1P02461 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC31.51■■■□□ 2.63
COL3A1P02461 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC31.5■■■□□ 2.63
COL3A1P02461 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
COL3A1P02461 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
COL3A1P02461 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC31.49■■■□□ 2.63
COL3A1P02461 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
COL3A1P02461 MIR6089-201ENST00000616698 64 ntBASIC31.49■■■□□ 2.63
COL3A1P02461 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC31.49■■■□□ 2.63
COL3A1P02461 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC31.49■■■□□ 2.63
COL3A1P02461 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
COL3A1P02461 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
COL3A1P02461 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC31.48■■■□□ 2.63
COL3A1P02461 HES6-204ENST00000409182 863 ntTSL 2 BASIC31.48■■■□□ 2.63
COL3A1P02461 SLC6A10P-202ENST00000431994 2058 ntBASIC31.48■■■□□ 2.63
COL3A1P02461 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
COL3A1P02461 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC31.48■■■□□ 2.63
COL3A1P02461 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
COL3A1P02461 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
COL3A1P02461 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
COL3A1P02461 Z92544.1-202ENST00000571933 1220 ntBASIC31.47■■■□□ 2.63
COL3A1P02461 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC31.47■■■□□ 2.63
COL3A1P02461 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC31.47■■■□□ 2.63
COL3A1P02461 AC137630.3-201ENST00000607245 391 ntBASIC31.47■■■□□ 2.63
COL3A1P02461 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
COL3A1P02461 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
COL3A1P02461 SSSCA1-AS1-201ENST00000567594 614 ntBASIC31.46■■■□□ 2.63
COL3A1P02461 GAK-223ENST00000628912 497 ntTSL 5 BASIC31.46■■■□□ 2.63
COL3A1P02461 AF131216.4-201ENST00000638924 1588 ntBASIC31.46■■■□□ 2.63
COL3A1P02461 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC31.46■■■□□ 2.63
COL3A1P02461 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
COL3A1P02461 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
COL3A1P02461 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC31.46■■■□□ 2.63
COL3A1P02461 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC31.45■■■□□ 2.62
COL3A1P02461 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC31.44■■■□□ 2.62
COL3A1P02461 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
COL3A1P02461 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC31.44■■■□□ 2.62
COL3A1P02461 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC31.44■■■□□ 2.62
COL3A1P02461 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC31.44■■■□□ 2.62
COL3A1P02461 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC31.44■■■□□ 2.62
COL3A1P02461 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
COL3A1P02461 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC31.44■■■□□ 2.62
COL3A1P02461 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
COL3A1P02461 CREM-210ENST00000374721 2020 ntTSL 5 BASIC31.43■■■□□ 2.62
COL3A1P02461 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
COL3A1P02461 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC31.43■■■□□ 2.62
COL3A1P02461 SENP5-202ENST00000419026 973 ntTSL 3 BASIC31.43■■■□□ 2.62
Retrieved 100 of 98,524 protein–RNA pairs in 64 ms