Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC25.55■■□□□ 1.68
SMIM28A0A1B0GU29 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
SMIM28A0A1B0GU29 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC25.55■■□□□ 1.68
SMIM28A0A1B0GU29 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC25.54■■□□□ 1.68
SMIM28A0A1B0GU29 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
SMIM28A0A1B0GU29 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
SMIM28A0A1B0GU29 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC25.54■■□□□ 1.68
SMIM28A0A1B0GU29 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC25.54■■□□□ 1.68
SMIM28A0A1B0GU29 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
SMIM28A0A1B0GU29 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
SMIM28A0A1B0GU29 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
SMIM28A0A1B0GU29 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
SMIM28A0A1B0GU29 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC25.53■■□□□ 1.68
SMIM28A0A1B0GU29 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC25.53■■□□□ 1.68
SMIM28A0A1B0GU29 AC091060.1-201ENST00000623524 1766 ntBASIC25.52■■□□□ 1.68
SMIM28A0A1B0GU29 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC25.52■■□□□ 1.68
SMIM28A0A1B0GU29 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC25.52■■□□□ 1.68
SMIM28A0A1B0GU29 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC25.51■■□□□ 1.67
SMIM28A0A1B0GU29 AC137630.3-201ENST00000607245 391 ntBASIC25.51■■□□□ 1.67
SMIM28A0A1B0GU29 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC25.51■■□□□ 1.67
SMIM28A0A1B0GU29 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC25.51■■□□□ 1.67
SMIM28A0A1B0GU29 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
SMIM28A0A1B0GU29 DUSP8P4-201ENST00000399538 1761 ntBASIC25.51■■□□□ 1.67
SMIM28A0A1B0GU29 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
SMIM28A0A1B0GU29 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
SMIM28A0A1B0GU29 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
SMIM28A0A1B0GU29 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC25.5■■□□□ 1.67
SMIM28A0A1B0GU29 BX664725.1-201ENST00000438252 379 ntBASIC25.5■■□□□ 1.67
SMIM28A0A1B0GU29 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
SMIM28A0A1B0GU29 MIR4281-201ENST00000580852 62 ntBASIC25.5■■□□□ 1.67
SMIM28A0A1B0GU29 AC011551.1-201ENST00000614101 683 ntBASIC25.5■■□□□ 1.67
SMIM28A0A1B0GU29 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC25.49■■□□□ 1.67
SMIM28A0A1B0GU29 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC25.49■■□□□ 1.67
SMIM28A0A1B0GU29 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
SMIM28A0A1B0GU29 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC25.49■■□□□ 1.67
SMIM28A0A1B0GU29 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC25.49■■□□□ 1.67
SMIM28A0A1B0GU29 SSSCA1-AS1-201ENST00000567594 614 ntBASIC25.49■■□□□ 1.67
SMIM28A0A1B0GU29 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
SMIM28A0A1B0GU29 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC25.49■■□□□ 1.67
SMIM28A0A1B0GU29 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC25.48■■□□□ 1.67
SMIM28A0A1B0GU29 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC25.48■■□□□ 1.67
SMIM28A0A1B0GU29 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC25.48■■□□□ 1.67
SMIM28A0A1B0GU29 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC25.47■■□□□ 1.67
SMIM28A0A1B0GU29 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
SMIM28A0A1B0GU29 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC25.47■■□□□ 1.67
SMIM28A0A1B0GU29 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC25.47■■□□□ 1.67
SMIM28A0A1B0GU29 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC25.47■■□□□ 1.67
SMIM28A0A1B0GU29 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC25.47■■□□□ 1.67
SMIM28A0A1B0GU29 GAK-223ENST00000628912 497 ntTSL 5 BASIC25.47■■□□□ 1.67
SMIM28A0A1B0GU29 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
SMIM28A0A1B0GU29 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC25.47■■□□□ 1.67
SMIM28A0A1B0GU29 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
SMIM28A0A1B0GU29 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
SMIM28A0A1B0GU29 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
SMIM28A0A1B0GU29 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC25.46■■□□□ 1.67
SMIM28A0A1B0GU29 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
SMIM28A0A1B0GU29 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC25.46■■□□□ 1.67
SMIM28A0A1B0GU29 KRT125P-201ENST00000546827 989 ntBASIC25.46■■□□□ 1.67
SMIM28A0A1B0GU29 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
SMIM28A0A1B0GU29 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
SMIM28A0A1B0GU29 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
SMIM28A0A1B0GU29 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC25.45■■□□□ 1.67
SMIM28A0A1B0GU29 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
SMIM28A0A1B0GU29 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
SMIM28A0A1B0GU29 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC25.45■■□□□ 1.66
SMIM28A0A1B0GU29 MIR4787-201ENST00000607364 84 ntBASIC25.45■■□□□ 1.66
SMIM28A0A1B0GU29 AC145676.1-201ENST00000514988 2004 ntBASIC25.45■■□□□ 1.66
SMIM28A0A1B0GU29 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC25.45■■□□□ 1.66
SMIM28A0A1B0GU29 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC25.45■■□□□ 1.66
SMIM28A0A1B0GU29 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
SMIM28A0A1B0GU29 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
SMIM28A0A1B0GU29 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
SMIM28A0A1B0GU29 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC25.44■■□□□ 1.66
SMIM28A0A1B0GU29 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
SMIM28A0A1B0GU29 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC25.44■■□□□ 1.66
SMIM28A0A1B0GU29 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC25.44■■□□□ 1.66
SMIM28A0A1B0GU29 AC021242.3-201ENST00000607598 1377 ntBASIC25.44■■□□□ 1.66
SMIM28A0A1B0GU29 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
SMIM28A0A1B0GU29 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
SMIM28A0A1B0GU29 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC25.43■■□□□ 1.66
SMIM28A0A1B0GU29 CREM-229ENST00000474362 1030 ntTSL 2 BASIC25.43■■□□□ 1.66
SMIM28A0A1B0GU29 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC25.43■■□□□ 1.66
SMIM28A0A1B0GU29 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
SMIM28A0A1B0GU29 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
SMIM28A0A1B0GU29 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC25.42■■□□□ 1.66
SMIM28A0A1B0GU29 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC25.42■■□□□ 1.66
SMIM28A0A1B0GU29 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC25.41■■□□□ 1.66
SMIM28A0A1B0GU29 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC25.41■■□□□ 1.66
SMIM28A0A1B0GU29 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC25.41■■□□□ 1.66
SMIM28A0A1B0GU29 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
SMIM28A0A1B0GU29 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC25.4■■□□□ 1.66
SMIM28A0A1B0GU29 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC25.4■■□□□ 1.66
SMIM28A0A1B0GU29 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC25.4■■□□□ 1.66
SMIM28A0A1B0GU29 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC25.4■■□□□ 1.66
SMIM28A0A1B0GU29 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC25.4■■□□□ 1.66
SMIM28A0A1B0GU29 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC25.39■■□□□ 1.66
SMIM28A0A1B0GU29 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
SMIM28A0A1B0GU29 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
SMIM28A0A1B0GU29 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC25.39■■□□□ 1.65
SMIM28A0A1B0GU29 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
Retrieved 100 of 98,524 protein–RNA pairs in 236.8 ms