Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC30.49■■■□□ 2.47
SHROOM4Q9ULL8 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
SHROOM4Q9ULL8 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC30.49■■■□□ 2.47
SHROOM4Q9ULL8 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
SHROOM4Q9ULL8 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
SHROOM4Q9ULL8 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC30.49■■■□□ 2.47
SHROOM4Q9ULL8 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
SHROOM4Q9ULL8 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC30.49■■■□□ 2.47
SHROOM4Q9ULL8 DUX4L45-201ENST00000566406 1057 ntBASIC30.49■■■□□ 2.47
SHROOM4Q9ULL8 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC30.49■■■□□ 2.47
SHROOM4Q9ULL8 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC30.49■■■□□ 2.47
SHROOM4Q9ULL8 ABBA01031660.1-201ENST00000635219 756 ntBASIC30.49■■■□□ 2.47
SHROOM4Q9ULL8 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC30.49■■■□□ 2.47
SHROOM4Q9ULL8 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC30.49■■■□□ 2.47
SHROOM4Q9ULL8 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
SHROOM4Q9ULL8 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
SHROOM4Q9ULL8 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC30.49■■■□□ 2.47
SHROOM4Q9ULL8 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
SHROOM4Q9ULL8 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC30.49■■■□□ 2.47
SHROOM4Q9ULL8 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
SHROOM4Q9ULL8 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
SHROOM4Q9ULL8 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
SHROOM4Q9ULL8 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
SHROOM4Q9ULL8 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC30.48■■■□□ 2.47
SHROOM4Q9ULL8 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC30.48■■■□□ 2.47
SHROOM4Q9ULL8 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC30.48■■■□□ 2.47
SHROOM4Q9ULL8 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC30.48■■■□□ 2.47
SHROOM4Q9ULL8 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC30.48■■■□□ 2.47
SHROOM4Q9ULL8 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC30.48■■■□□ 2.47
SHROOM4Q9ULL8 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC30.48■■■□□ 2.47
SHROOM4Q9ULL8 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC30.48■■■□□ 2.47
SHROOM4Q9ULL8 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC30.48■■■□□ 2.47
SHROOM4Q9ULL8 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC30.48■■■□□ 2.47
SHROOM4Q9ULL8 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC30.47■■■□□ 2.47
SHROOM4Q9ULL8 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
SHROOM4Q9ULL8 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
SHROOM4Q9ULL8 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC30.47■■■□□ 2.47
SHROOM4Q9ULL8 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
SHROOM4Q9ULL8 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC30.47■■■□□ 2.47
SHROOM4Q9ULL8 GZMB-202ENST00000382540 816 ntTSL 5 BASIC30.47■■■□□ 2.47
SHROOM4Q9ULL8 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC30.47■■■□□ 2.47
SHROOM4Q9ULL8 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC30.47■■■□□ 2.47
SHROOM4Q9ULL8 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC30.47■■■□□ 2.47
SHROOM4Q9ULL8 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC30.47■■■□□ 2.47
SHROOM4Q9ULL8 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC30.47■■■□□ 2.47
SHROOM4Q9ULL8 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC30.47■■■□□ 2.47
SHROOM4Q9ULL8 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC30.47■■■□□ 2.47
SHROOM4Q9ULL8 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
SHROOM4Q9ULL8 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC30.47■■■□□ 2.47
SHROOM4Q9ULL8 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
SHROOM4Q9ULL8 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
SHROOM4Q9ULL8 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
SHROOM4Q9ULL8 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC30.46■■■□□ 2.47
SHROOM4Q9ULL8 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC30.46■■■□□ 2.47
SHROOM4Q9ULL8 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
SHROOM4Q9ULL8 RIT1-205ENST00000539040 919 ntTSL 2 BASIC30.46■■■□□ 2.47
SHROOM4Q9ULL8 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC30.46■■■□□ 2.47
SHROOM4Q9ULL8 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
SHROOM4Q9ULL8 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC30.46■■■□□ 2.47
SHROOM4Q9ULL8 CYP4F24P-201ENST00000586049 1580 ntBASIC30.46■■■□□ 2.47
SHROOM4Q9ULL8 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
SHROOM4Q9ULL8 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC30.46■■■□□ 2.47
SHROOM4Q9ULL8 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC30.46■■■□□ 2.47
SHROOM4Q9ULL8 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC30.46■■■□□ 2.47
SHROOM4Q9ULL8 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
SHROOM4Q9ULL8 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC30.46■■■□□ 2.47
SHROOM4Q9ULL8 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC30.45■■■□□ 2.47
SHROOM4Q9ULL8 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC30.45■■■□□ 2.47
SHROOM4Q9ULL8 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC30.45■■■□□ 2.47
SHROOM4Q9ULL8 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC30.45■■■□□ 2.47
SHROOM4Q9ULL8 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC30.45■■■□□ 2.47
SHROOM4Q9ULL8 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC30.45■■■□□ 2.47
SHROOM4Q9ULL8 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
SHROOM4Q9ULL8 HIST3H2BA-201ENST00000436555 524 ntBASIC30.45■■■□□ 2.47
SHROOM4Q9ULL8 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC30.45■■■□□ 2.47
SHROOM4Q9ULL8 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
SHROOM4Q9ULL8 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC30.45■■■□□ 2.47
SHROOM4Q9ULL8 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC30.45■■■□□ 2.47
SHROOM4Q9ULL8 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC30.45■■■□□ 2.47
SHROOM4Q9ULL8 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC30.45■■■□□ 2.47
SHROOM4Q9ULL8 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC30.45■■■□□ 2.47
SHROOM4Q9ULL8 HNRNPA1P48-201ENST00000562726 1377 ntBASIC30.45■■■□□ 2.47
SHROOM4Q9ULL8 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC30.45■■■□□ 2.47
SHROOM4Q9ULL8 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC30.45■■■□□ 2.46
SHROOM4Q9ULL8 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
SHROOM4Q9ULL8 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC30.45■■■□□ 2.46
SHROOM4Q9ULL8 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC30.45■■■□□ 2.46
SHROOM4Q9ULL8 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC30.45■■■□□ 2.46
SHROOM4Q9ULL8 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC30.45■■■□□ 2.46
SHROOM4Q9ULL8 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC30.45■■■□□ 2.46
SHROOM4Q9ULL8 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC30.45■■■□□ 2.46
SHROOM4Q9ULL8 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
SHROOM4Q9ULL8 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC30.45■■■□□ 2.46
SHROOM4Q9ULL8 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
SHROOM4Q9ULL8 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
SHROOM4Q9ULL8 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
SHROOM4Q9ULL8 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC30.44■■■□□ 2.46
SHROOM4Q9ULL8 ACTG1P3-201ENST00000431775 1114 ntBASIC30.44■■■□□ 2.46
SHROOM4Q9ULL8 NME4-207ENST00000450036 985 ntTSL 3 BASIC30.44■■■□□ 2.46
SHROOM4Q9ULL8 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC30.44■■■□□ 2.46
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms