Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SCN11AQ9UI33 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
SCN11AQ9UI33 FLII-221ENST00000578558 2377 ntTSL 5 BASIC20.45■□□□□ 0.86
SCN11AQ9UI33 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC20.45■□□□□ 0.86
SCN11AQ9UI33 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SCN11AQ9UI33 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SCN11AQ9UI33 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SCN11AQ9UI33 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SCN11AQ9UI33 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
SCN11AQ9UI33 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC20.45■□□□□ 0.86
SCN11AQ9UI33 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC20.45■□□□□ 0.86
SCN11AQ9UI33 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SCN11AQ9UI33 IFT20-206ENST00000578122 834 ntTSL 2 BASIC20.45■□□□□ 0.86
SCN11AQ9UI33 IFT20-208ENST00000578985 831 ntTSL 3 BASIC20.45■□□□□ 0.86
SCN11AQ9UI33 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC20.45■□□□□ 0.86
SCN11AQ9UI33 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC20.45■□□□□ 0.86
SCN11AQ9UI33 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SCN11AQ9UI33 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC20.45■□□□□ 0.86
SCN11AQ9UI33 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC20.45■□□□□ 0.86
SCN11AQ9UI33 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC20.45■□□□□ 0.86
SCN11AQ9UI33 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC20.45■□□□□ 0.86
SCN11AQ9UI33 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC20.45■□□□□ 0.86
SCN11AQ9UI33 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SCN11AQ9UI33 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SCN11AQ9UI33 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SCN11AQ9UI33 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC20.44■□□□□ 0.86
SCN11AQ9UI33 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SCN11AQ9UI33 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SCN11AQ9UI33 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SCN11AQ9UI33 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC20.44■□□□□ 0.86
SCN11AQ9UI33 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SCN11AQ9UI33 STX1A-203ENST00000395155 783 ntTSL 2 BASIC20.44■□□□□ 0.86
SCN11AQ9UI33 RAC2-202ENST00000401529 569 ntTSL 4 BASIC20.44■□□□□ 0.86
SCN11AQ9UI33 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
SCN11AQ9UI33 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC20.44■□□□□ 0.86
SCN11AQ9UI33 AP001889.1-201ENST00000525414 633 ntBASIC20.44■□□□□ 0.86
SCN11AQ9UI33 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SCN11AQ9UI33 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC20.44■□□□□ 0.86
SCN11AQ9UI33 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC20.44■□□□□ 0.86
SCN11AQ9UI33 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC20.44■□□□□ 0.86
SCN11AQ9UI33 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SCN11AQ9UI33 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC20.44■□□□□ 0.86
SCN11AQ9UI33 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC20.44■□□□□ 0.86
SCN11AQ9UI33 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SCN11AQ9UI33 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.44■□□□□ 0.86
SCN11AQ9UI33 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SCN11AQ9UI33 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SCN11AQ9UI33 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SCN11AQ9UI33 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC20.44■□□□□ 0.86
SCN11AQ9UI33 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
SCN11AQ9UI33 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SCN11AQ9UI33 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC20.44■□□□□ 0.86
SCN11AQ9UI33 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
SCN11AQ9UI33 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC20.44■□□□□ 0.86
SCN11AQ9UI33 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC20.44■□□□□ 0.86
SCN11AQ9UI33 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC20.44■□□□□ 0.86
SCN11AQ9UI33 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC20.44■□□□□ 0.86
SCN11AQ9UI33 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC20.44■□□□□ 0.86
SCN11AQ9UI33 BTNL10-201ENST00000595971 695 ntBASIC20.44■□□□□ 0.86
SCN11AQ9UI33 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC20.44■□□□□ 0.86
SCN11AQ9UI33 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SCN11AQ9UI33 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SCN11AQ9UI33 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC20.43■□□□□ 0.86
SCN11AQ9UI33 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC20.43■□□□□ 0.86
SCN11AQ9UI33 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
SCN11AQ9UI33 AC093525.8-201ENST00000624099 1342 ntBASIC20.43■□□□□ 0.86
SCN11AQ9UI33 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SCN11AQ9UI33 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SCN11AQ9UI33 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC20.43■□□□□ 0.86
SCN11AQ9UI33 AC018892.3-201ENST00000623986 2499 ntBASIC20.43■□□□□ 0.86
SCN11AQ9UI33 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SCN11AQ9UI33 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SCN11AQ9UI33 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC20.43■□□□□ 0.86
SCN11AQ9UI33 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
SCN11AQ9UI33 KLF2P4-201ENST00000451959 1225 ntBASIC20.43■□□□□ 0.86
SCN11AQ9UI33 AC093433.1-201ENST00000458048 571 ntBASIC20.43■□□□□ 0.86
SCN11AQ9UI33 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC20.43■□□□□ 0.86
SCN11AQ9UI33 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC20.43■□□□□ 0.86
SCN11AQ9UI33 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC20.43■□□□□ 0.86
SCN11AQ9UI33 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC20.43■□□□□ 0.86
SCN11AQ9UI33 DUX4L45-201ENST00000566406 1057 ntBASIC20.43■□□□□ 0.86
SCN11AQ9UI33 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
SCN11AQ9UI33 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
SCN11AQ9UI33 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC20.43■□□□□ 0.86
SCN11AQ9UI33 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
SCN11AQ9UI33 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SCN11AQ9UI33 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
SCN11AQ9UI33 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SCN11AQ9UI33 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC20.42■□□□□ 0.86
SCN11AQ9UI33 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC20.42■□□□□ 0.86
SCN11AQ9UI33 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC20.42■□□□□ 0.86
SCN11AQ9UI33 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
SCN11AQ9UI33 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SCN11AQ9UI33 GZMB-202ENST00000382540 816 ntTSL 5 BASIC20.42■□□□□ 0.86
SCN11AQ9UI33 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SCN11AQ9UI33 BCRP2-202ENST00000447763 634 ntBASIC20.42■□□□□ 0.86
SCN11AQ9UI33 BCRP6-201ENST00000510112 632 ntBASIC20.42■□□□□ 0.86
SCN11AQ9UI33 BCRP7-201ENST00000511549 544 ntBASIC20.42■□□□□ 0.86
SCN11AQ9UI33 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC20.42■□□□□ 0.86
SCN11AQ9UI33 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms