Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CCDC116Q8IYX3 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
CCDC116Q8IYX3 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CCDC116Q8IYX3 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
CCDC116Q8IYX3 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CCDC116Q8IYX3 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.05
CCDC116Q8IYX3 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CCDC116Q8IYX3 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.05
CCDC116Q8IYX3 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.05
CCDC116Q8IYX3 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
CCDC116Q8IYX3 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 HTR5BP-201ENST00000430851 1154 ntBASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 SPDYE11-202ENST00000450699 704 ntBASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 AC243562.1-201ENST00000560672 389 ntBASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 SPDYE9P-201ENST00000570642 692 ntBASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 RN7SL275P-201ENST00000582762 335 ntBASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 AC027307.2-201ENST00000591252 911 ntBASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 AC026120.1-201ENST00000611536 926 ntBASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 SPDYE10P-202ENST00000612005 668 ntBASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 SPDYE8P-202ENST00000612377 668 ntBASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
CCDC116Q8IYX3 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC116Q8IYX3 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
CCDC116Q8IYX3 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC116Q8IYX3 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC15.32■□□□□ 0.04
CCDC116Q8IYX3 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC116Q8IYX3 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC15.32■□□□□ 0.04
CCDC116Q8IYX3 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC15.32■□□□□ 0.04
CCDC116Q8IYX3 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
CCDC116Q8IYX3 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC116Q8IYX3 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC116Q8IYX3 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC15.32■□□□□ 0.04
CCDC116Q8IYX3 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC116Q8IYX3 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC15.32■□□□□ 0.04
CCDC116Q8IYX3 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC116Q8IYX3 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
CCDC116Q8IYX3 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
CCDC116Q8IYX3 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC116Q8IYX3 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC116Q8IYX3 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC15.32■□□□□ 0.04
CCDC116Q8IYX3 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC15.32■□□□□ 0.04
CCDC116Q8IYX3 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC15.32■□□□□ 0.04
CCDC116Q8IYX3 ACTG1P14-201ENST00000446382 1122 ntBASIC15.32■□□□□ 0.04
CCDC116Q8IYX3 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
CCDC116Q8IYX3 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC15.32■□□□□ 0.04
CCDC116Q8IYX3 ALG1L5P-201ENST00000482043 771 ntBASIC15.32■□□□□ 0.04
CCDC116Q8IYX3 KRT8P48-201ENST00000515599 1220 ntBASIC15.32■□□□□ 0.04
CCDC116Q8IYX3 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC15.32■□□□□ 0.04
CCDC116Q8IYX3 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC116Q8IYX3 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
CCDC116Q8IYX3 CITED2-204ENST00000618718 901 ntTSL 2 BASIC15.32■□□□□ 0.04
CCDC116Q8IYX3 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC15.32■□□□□ 0.04
CCDC116Q8IYX3 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
CCDC116Q8IYX3 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC15.32■□□□□ 0.04
CCDC116Q8IYX3 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC116Q8IYX3 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC116Q8IYX3 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC15.32■□□□□ 0.04
CCDC116Q8IYX3 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC116Q8IYX3 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 81.8 ms